View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10641_low_15 (Length: 324)
Name: NF10641_low_15
Description: NF10641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10641_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 309
Target Start/End: Original strand, 42530112 - 42530418
Alignment:
| Q |
17 |
cagggatgactctgaagatcaatcgaagaaaaccaatgcggtaggttccatcaatgtgcgcagcatcttgtcggggaaatgtgtggcgaaaattaatgct |
116 |
Q |
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| T |
42530112 |
cagggatgactctgaagatcaatcgaaggaaaccaatgcggtaggttccatcaatgtgagcagcatcttgtcggggaaatgtgtggcgaaaattaatgct |
42530211 |
T |
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| Q |
117 |
gcaaaagctttggagtgcattgattcatctcaaataatgtcagtt------ccagaggctttggagggtatagcaatcctcta--------ttatgatga |
202 |
Q |
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| T |
42530212 |
gcaaaagctttggagtgcattgattcatctcaaataatgtcagttccagtcccagaggctttggagggtataaccaccctctattatgaatttatgatga |
42530311 |
T |
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| Q |
203 |
agaccggaacacgatttatacgggtgacagacatggtcttgttcatgtctggtccaactccaaccaactgatgataaaaaaggagtaggttttattgttt |
302 |
Q |
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|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42530312 |
agaccggaacgcgatttatacgggtaacagacatggtcttgttcatgtctggtccaactccaaccaactgatgataaaaaaggaataggttttattgttt |
42530411 |
T |
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| Q |
303 |
cttctca |
309 |
Q |
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||||||| |
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| T |
42530412 |
cttctca |
42530418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 309
Target Start/End: Original strand, 42535828 - 42536120
Alignment:
| Q |
17 |
cagggatgactctgaagatcaatcgaagaaaaccaatgcggtaggttccatcaatgtgcgcagcatcttgtcggggaaatgtgtggcgaaaattaatgct |
116 |
Q |
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|||||||||||||||||||||||||| | ||||||| | ||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||| |
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| T |
42535828 |
cagggatgactctgaagatcaatcgatggttaccaatgtgataggttccatcaatgtgagcaacatcttatcggggaaatgtgtggcgaaaattaatgct |
42535927 |
T |
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| Q |
117 |
gcaaaagctttggagtgcattgattcatctcaaataatgtcagttccagaggctttggagggtatagcaatcctctattatgatgaagaccggaacacga |
216 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||| | | ||||||||||||||||||||||||| ||| |
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| T |
42535928 |
acaaaagctttggagtgcattgattcatctaaaaaaatgtcagttacagaggctttggagggtataaccaccctctattatgatgaagaccggaacgcga |
42536027 |
T |
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| Q |
217 |
tttatacgggtgacagacatggtcttgttcatgtctggtccaactccaaccaactgatgataaaaaaggagtaggttttattgtttcttctca |
309 |
Q |
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| T |
42536028 |
tttatacgggtaacagacatggtcatgttcatgtctggtccaactccaaccaactaatgataaaaaaggaataggttttattgtttcttctca |
42536120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 27826012 - 27826073
Alignment:
| Q |
60 |
ggttccatcaatgtgcgcagcatcttgtcggggaaatgtgtggcgaaaattaatgctgcaaa |
121 |
Q |
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| T |
27826012 |
ggttccatcaatgtgagcaacatcttgacagggaaatgtgtggcgaaaattaatgctgcaaa |
27826073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 261
Target Start/End: Original strand, 27826179 - 27826252
Alignment:
| Q |
188 |
cctctattatgatgaagaccggaacacgatttatacgggtgacagacatggtcttgttcatgtctggtccaact |
261 |
Q |
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||||| ||||||||||||||||||| ||| ||||| ||| | ||||||||| |||||||||| |||||||||| |
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| T |
27826179 |
cctcttttatgatgaagaccggaacgagatctatactggtaatagacatggttttgttcatgtatggtccaact |
27826252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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