View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10641_low_16 (Length: 320)
Name: NF10641_low_16
Description: NF10641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10641_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 16053046 - 16052756
Alignment:
| Q |
18 |
gagacagcctcactaatgttggtttgcttgccattcttgataagtgcccttttcttaaatctcttgacattcgacgatgttattctttggaattaagtat |
117 |
Q |
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| T |
16053046 |
gagacaacctcactaatgatggtttgctcgccattcttgataaatgcccttttcttgaatctcttgaccttcaaggatgtcgttatctagaattaagtaa |
16052947 |
T |
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| Q |
118 |
aagtttgaagaaaaggtgcactgagcagatcaatcatttgcaactgccaaattcttatgactttgatgactatgattactcccctagttatgaatatgac |
217 |
Q |
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| T |
16052946 |
aagtttggagaaaaggtgcattgatccgatcaatcatttgcgactgccaaatttttatgtctttgatgactatgattactcccc---ttgtgaatatgac |
16052850 |
T |
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| Q |
218 |
tttggcggagactatgatccttggtactactgaatgttgtagtattggtg--atgatgaaaaataaggtttttatattatacggtggatttctt |
309 |
Q |
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| T |
16052849 |
tttggcggagactatgattcttggtactactgaatgttgtagtattggtgatatgatgaaaaataaggtttttatattatacggtggatttctt |
16052756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 26 - 186
Target Start/End: Original strand, 15936203 - 15936363
Alignment:
| Q |
26 |
ctcactaatgttggtttgcttgccattcttgataagtgcccttttcttaaatctcttgacattcgacgatgttattctttggaattaagtataagtttga |
125 |
Q |
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| T |
15936203 |
ctcactaatgatggtttgctcgccattcttgataaatggccttttcttgaatctcttgaccttcaaggatgtcgttatctcgaattgagtgaaagtttgg |
15936302 |
T |
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| Q |
126 |
agaaaaggtgcactgagcagatcaatcatttgcaactgccaaattcttatgactttgatga |
186 |
Q |
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| T |
15936303 |
aaaaaaggtgcattgatcgaatcaatcatttgcaactgccaattcgttatgactctgatga |
15936363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 238 - 309
Target Start/End: Original strand, 15936391 - 15936462
Alignment:
| Q |
238 |
ttggtactactgaatgttgtagtattggtgatgatgaaaaataaggtttttatattatacggtggatttctt |
309 |
Q |
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| T |
15936391 |
ttggtactagtgaatgttgtagtcttagtgatgatgaaaaataaagtttttatattatactgtgaatttctt |
15936462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 29 - 166
Target Start/End: Complemental strand, 36309212 - 36309075
Alignment:
| Q |
29 |
actaatgttggtttgcttgccattcttgataagtgcccttttcttaaatctcttgacattcgacgatgttattctttggaattaagtataagtttgaaga |
128 |
Q |
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| T |
36309212 |
actaatgttggtttgcatgccattcttgttaagtgccctctgcttaaatctcttgacattcgtcgatgacattatcttgaattgagtgaaagtttgaaga |
36309113 |
T |
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| Q |
129 |
aaaggtgcactgagcagatcaatcatttgcaactgcca |
166 |
Q |
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| T |
36309112 |
aaaggtgcattgatcagatcaatgatttgcaactgcca |
36309075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 36327486 - 36327440
Alignment:
| Q |
121 |
tttgaagaaaaggtgcactgagcagatcaatcatttgcaactgccaa |
167 |
Q |
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| T |
36327486 |
tttgaagaaaaggtgcattgaccagatcaaggatttgcaactgccaa |
36327440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 36336015 - 36335970
Alignment:
| Q |
121 |
tttgaagaaaaggtgcactgagcagatcaatcatttgcaactgcca |
166 |
Q |
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| T |
36336015 |
tttgaagaaaaggtgcattgaccagatcaaggatttgcaactgcca |
36335970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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