View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10641_low_17 (Length: 305)
Name: NF10641_low_17
Description: NF10641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10641_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 290
Target Start/End: Complemental strand, 24400938 - 24400665
Alignment:
| Q |
14 |
aggcaacactagtcacatacaagctcaaaaattgaaggaaaccagccacataggtccttttattacctgaaccaacaacattaaacacaatttgaagtta |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
24400938 |
aggcaacactagtcacatacaagctcaaaaattgaaggaaaccagccacataggtccttttattaccttaaccaaca---ttaaacacaatttgaagtta |
24400842 |
T |
|
| Q |
114 |
tagttgttagcagttcatgaaaaacatatctatgttgtctagagtgattggacatagtgaagagtgtaatgtgttattaccaagattgactctaacagca |
213 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24400841 |
tagttgttagcagttcatgaaaaacatatctatgttggctagagtgattggacatagtgaagagtgtaatatgttattaccaagattgactctaacagca |
24400742 |
T |
|
| Q |
214 |
tccataaaagagtggtttcttttcccagttaccgaatcaggatgtctgtaacaatcagccaaaagggatgaagaaat |
290 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24400741 |
tccataaaagagtggtttcttttcccagttacagaatcaggatgtctgtaacaatcagccaaaagggatgaagaaat |
24400665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 14 - 289
Target Start/End: Complemental strand, 24378078 - 24377823
Alignment:
| Q |
14 |
aggcaacactagtcacatacaagctcaaaaattgaaggaaaccagccacataggtccttttattacctgaaccaacaacattaaacacaatttgaagtta |
113 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||| | |||||| |||||| || | |||||||| ||| || |||||| |
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| T |
24378078 |
aggcaatactagtgacatacaagctcaaaaattgaaggaaaccagccacatatgccctttttgtacctgtac----agcattaaactcaaattaaagtta |
24377983 |
T |
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| Q |
114 |
tagttgttagcagttcatgaaaaacatatctatgttgtctagagtgattggacatagtgaagagtgtaatgtgttattaccaagattgactctaacagca |
213 |
Q |
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| T |
24377982 |
taa----------------aaaaacatatatatgttgggtagagtgattaaacaaggtgaagaatgttatgtttaattaccaagattgactctaacagca |
24377899 |
T |
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| Q |
214 |
tccataaaagagtggtttcttttcccagttaccgaatcaggatgtctgtaacaatcagccaaaagggatgaagaaa |
289 |
Q |
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||||||||||||| ||||||||||||| |||| || |||||||||||||||||||||||||||||| ||||||||| |
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| T |
24377898 |
tccataaaagagtagtttcttttcccatttacagagtcaggatgtctgtaacaatcagccaaaaggaatgaagaaa |
24377823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 190 - 290
Target Start/End: Complemental strand, 24413214 - 24413114
Alignment:
| Q |
190 |
ttaccaagattgactctaacagcatccataaaagagtggtttcttttcccagttaccgaatcaggatgtctgtaacaatcagccaaaagggatgaagaaa |
289 |
Q |
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||||||||||| ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||| |
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| T |
24413214 |
ttaccaagattaactctaacagcatccatgtaagagtagttccttttcccagttaccgaatcaggatttctgtaacaatcagataaaaggaatgaagaaa |
24413115 |
T |
|
| Q |
290 |
t |
290 |
Q |
| |
|
| |
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| T |
24413114 |
t |
24413114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 190 - 290
Target Start/End: Original strand, 24420827 - 24420927
Alignment:
| Q |
190 |
ttaccaagattgactctaacagcatccataaaagagtggtttcttttcccagttaccgaatcaggatgtctgtaacaatcagccaaaagggatgaagaaa |
289 |
Q |
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||||||||||| ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||| |||||||||||| | |||||| ||||||||| |
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| T |
24420827 |
ttaccaagattaactctaacagcatccatgtaagagtagttccttttcccagttaccgaatcaggatttctgtaacaatcggataaaaggaatgaagaaa |
24420926 |
T |
|
| Q |
290 |
t |
290 |
Q |
| |
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| |
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|
| T |
24420927 |
t |
24420927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 24413380 - 24413310
Alignment:
| Q |
14 |
aggcaacactagtcacatacaagctcaaaaattgaaggaaaccagccacataggtccttttattacctgaa |
84 |
Q |
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||||||||| |||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24413380 |
aggcaacaccagtcccatacaaggtcaaaaattgaaggaaaccagccacatatgtccttttattacctgaa |
24413310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 24420661 - 24420731
Alignment:
| Q |
14 |
aggcaacactagtcacatacaagctcaaaaattgaaggaaaccagccacataggtccttttattacctgaa |
84 |
Q |
| |
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|||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
24420661 |
aggcaacactagtcccatacaaggtcaaaaattgaaggaaaccagccacatatgtcctcttattacctgaa |
24420731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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