View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10641_low_18 (Length: 296)
Name: NF10641_low_18
Description: NF10641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10641_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 7202239 - 7202509
Alignment:
| Q |
19 |
agtgtgaacacccctaaccaaaataattaa----gttagacactttcattttgatttgaattgtatgtgtaaatctgaaaagatttgacacttcctctac |
114 |
Q |
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| T |
7202239 |
agtgtgaacacccctaaccaaaataattcattcagttggacactttcattttgatttgaattgtatgtgtaaatctgacaagatttgacacttcctctac |
7202338 |
T |
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| Q |
115 |
aaagaaaaggacagtcgttaagtcagagacatttgtggcctttcaatttccaatttgtgtcattattgacagcatactctctcagccacagttatccaac |
214 |
Q |
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| T |
7202339 |
aaagaaaaggacagtcattaagtcagagacatttgtggcctttcaatttccaatttgtgtcattattgacagcatactctctcagccacagttatccaac |
7202438 |
T |
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| Q |
215 |
cattatatagccaacacaacatgctcttcaatgccaatgtagcatcccaacaacccatttgttaggttctt |
285 |
Q |
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| T |
7202439 |
cattatatagccaacacaacatgctcttcaatgccaatgtagcatcccaacaacccatttattaggttctt |
7202509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 7195027 - 7195242
Alignment:
| Q |
20 |
gtgtgaacacccctaaccaaaataattaagttagacactttcattttgatttgaattgtatgtgtaaatctgaaaagatttgacacttcctct--acaaa |
117 |
Q |
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| T |
7195027 |
gtgtgaacaccac-aactaaaataattaagttagacactttcattttgatttgaattctatgtgtaaatctgata-gatttgacacttcctctctacaaa |
7195124 |
T |
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| Q |
118 |
gaaaaggacagtcgttaagtcagagacatttgtggcctttcaatttccaatttgtgtcattattgacagcatactctctcagccacagttatccaaccat |
217 |
Q |
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| T |
7195125 |
gaaaaagacagtcatta-gtcagagacatttgtggcctttcaatttccaatttgtgtcattatttacaacatactctctcagccacagttatccaaccat |
7195223 |
T |
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| Q |
218 |
tatatagccaacacaacat |
236 |
Q |
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| T |
7195224 |
tattgagcaaacacaacat |
7195242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 135 - 236
Target Start/End: Original strand, 7208776 - 7208877
Alignment:
| Q |
135 |
agtcagagacatttgtggcctttcaatttccaatttgtgtcattattgacagcatactctctcagccacagttatccaaccattatatagccaacacaac |
234 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
7208776 |
agtcagagacatttatggcctttcaatttccaatttgtgtcattatttacaacatactctctcagccacagttatccaaccattattgagcaaacacaac |
7208875 |
T |
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| Q |
235 |
at |
236 |
Q |
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|| |
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| T |
7208876 |
at |
7208877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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