View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10641_low_2 (Length: 440)

Name: NF10641_low_2
Description: NF10641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10641_low_2
NF10641_low_2
[»] chr6 (14 HSPs)
chr6 (4-421)||(32449903-32450323)
chr6 (199-367)||(10751297-10751464)
chr6 (176-352)||(26182392-26182566)
chr6 (229-367)||(23260351-23260489)
chr6 (265-367)||(34636555-34636656)
chr6 (372-423)||(10751195-10751246)
chr6 (314-423)||(13773067-13773172)
chr6 (293-386)||(24163325-24163416)
chr6 (372-423)||(34636707-34636758)
chr6 (256-331)||(20555634-20555709)
chr6 (49-126)||(23260523-23260598)
chr6 (370-419)||(26182339-26182388)
chr6 (372-400)||(23260272-23260300)
chr6 (49-101)||(25005374-25005426)
[»] chr1 (21 HSPs)
chr1 (4-421)||(35761690-35762110)
chr1 (152-371)||(19198447-19198669)
chr1 (199-367)||(37666915-37667082)
chr1 (53-268)||(16074936-16075150)
chr1 (314-423)||(18472572-18472677)
chr1 (372-421)||(37666815-37666864)
chr1 (372-421)||(43407004-43407053)
chr1 (251-367)||(16075096-16075211)
chr1 (288-367)||(9537128-9537206)
chr1 (288-367)||(43407104-43407182)
chr1 (372-420)||(338628-338676)
chr1 (288-367)||(338499-338577)
chr1 (376-423)||(6836422-6836469)
chr1 (288-366)||(8421953-8422030)
chr1 (293-355)||(26317615-26317677)
chr1 (258-369)||(28561778-28561890)
chr1 (283-363)||(25921874-25921953)
chr1 (305-367)||(33007388-33007449)
chr1 (376-419)||(19198431-19198474)
chr1 (242-303)||(6836247-6836308)
chr1 (335-371)||(6836413-6836449)
[»] chr4 (16 HSPs)
chr4 (1-423)||(49499198-49499625)
chr4 (250-423)||(2761744-2761913)
chr4 (284-367)||(40459338-40459420)
chr4 (372-419)||(55162712-55162759)
chr4 (305-367)||(55162562-55162623)
chr4 (372-421)||(40459471-40459520)
chr4 (291-365)||(13652928-13653002)
chr4 (291-365)||(13661053-13661127)
chr4 (376-419)||(69810-69853)
chr4 (372-419)||(28968878-28968925)
chr4 (288-367)||(28968976-28969059)
chr4 (242-303)||(69629-69690)
chr4 (315-386)||(42899892-42899960)
chr4 (315-371)||(69782-69837)
chr4 (344-399)||(69703-69762)
chr4 (1-34)||(28969213-28969246)
[»] chr7 (15 HSPs)
chr7 (1-418)||(21491136-21491560)
chr7 (199-423)||(22077977-22078198)
chr7 (1-418)||(18366970-18367393)
chr7 (272-367)||(11036083-11036178)
chr7 (283-423)||(48653481-48653617)
chr7 (265-367)||(15873712-15873813)
chr7 (372-421)||(10288428-10288477)
chr7 (288-367)||(10288528-10288606)
chr7 (372-423)||(15873610-15873661)
chr7 (288-367)||(40106201-40106279)
chr7 (288-367)||(12196433-12196511)
chr7 (272-310)||(9993666-9993704)
chr7 (295-363)||(12911434-12911501)
chr7 (295-419)||(49169979-49170111)
chr7 (290-423)||(9993756-9993893)
[»] chr3 (17 HSPs)
chr3 (49-367)||(16975460-16975789)
chr3 (178-372)||(11937561-11937756)
chr3 (199-367)||(5004457-5004624)
chr3 (242-371)||(9104525-9104654)
chr3 (265-367)||(46404338-46404439)
chr3 (372-423)||(46404236-46404287)
chr3 (372-421)||(7336331-7336380)
chr3 (288-367)||(7336431-7336509)
chr3 (247-361)||(8731155-8731269)
chr3 (247-361)||(9083042-9083156)
chr3 (335-414)||(17542349-17542425)
chr3 (372-423)||(16975840-16975891)
chr3 (376-423)||(9104627-9104674)
chr3 (1-98)||(11967862-11967954)
chr3 (242-303)||(17542500-17542561)
chr3 (315-367)||(43277783-43277834)
chr3 (388-423)||(5004366-5004401)
[»] chr5 (14 HSPs)
chr5 (214-418)||(4557646-4557850)
chr5 (265-367)||(537188-537289)
chr5 (312-419)||(25101568-25101671)
chr5 (312-419)||(25160661-25160764)
chr5 (372-421)||(537340-537389)
chr5 (49-126)||(4557914-4557990)
chr5 (288-366)||(40691266-40691343)
chr5 (315-366)||(104702-104753)
chr5 (376-419)||(6309214-6309257)
chr5 (288-367)||(30910190-30910267)
chr5 (344-399)||(6309107-6309166)
chr5 (215-284)||(6309116-6309184)
chr5 (283-352)||(42861801-42861869)
chr5 (315-371)||(6309186-6309241)
[»] chr8 (10 HSPs)
chr8 (272-423)||(40841161-40841309)
chr8 (288-399)||(44436513-44436620)
chr8 (315-419)||(22815964-22816064)
chr8 (305-367)||(41958159-41958220)
chr8 (312-398)||(22635692-22635774)
chr8 (344-414)||(44436597-44436664)
chr8 (272-310)||(35840682-35840720)
chr8 (378-419)||(3189107-3189148)
chr8 (370-419)||(22635642-22635691)
chr8 (288-332)||(35840736-35840780)
[»] chr2 (16 HSPs)
chr2 (252-423)||(12774074-12774243)
chr2 (252-367)||(28266848-28266963)
chr2 (288-367)||(18292431-18292509)
chr2 (288-363)||(40729168-40729242)
chr2 (288-367)||(41339990-41340068)
chr2 (372-420)||(40448001-40448049)
chr2 (288-367)||(40447872-40447950)
chr2 (245-333)||(29270991-29271079)
chr2 (376-419)||(44789030-44789073)
chr2 (288-364)||(34397559-34397632)
chr2 (283-354)||(35670502-35670572)
chr2 (372-419)||(40729066-40729113)
chr2 (272-303)||(44788879-44788910)
chr2 (344-423)||(35670425-35670501)
chr2 (378-423)||(36731866-36731911)
chr2 (335-371)||(44789021-44789057)
[»] scaffold0413 (1 HSPs)
scaffold0413 (199-310)||(9170-9281)
[»] scaffold0013 (1 HSPs)
scaffold0013 (315-419)||(242683-242783)
[»] scaffold0041 (1 HSPs)
scaffold0041 (288-423)||(32967-33100)


Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 4 - 421
Target Start/End: Complemental strand, 32450323 - 32449903
Alignment:
Q  4 gaatgacatttattttattttcctatgcatagatgnnnnnnnnnngtggtattgggaaagaagtgttagattttgttgataaacaaaagaaatgaaaaat 103  Q
    ||||||||||||||||||||| ||||||||| |||          |||||||||  |||||||||||||| ||||||||||||| ||| ||||||||| |    
T  32450323 gaatgacatttattttatttttctatgcatatatgttttt-----gtggtattgttaaagaagtgttagactttgttgataaactaaataaatgaaaa-t 32450230  T
Q  104 aaagatatatgagttttatgaaaggattgactttttgttcaagtggacaatgatgtgttaatctctgactgggtttgccta------------agtggag 191  Q
    | ||| |||||||||||||||||  |||   |||| ||||| ||| |  ||||||||||||| ||||||||  ||||||||            ||| | |    
T  32450229 atagaaatatgagttttatgaaaatatttcattttggttcatgtgcatgatgatgtgttaatatctgactgtatttgcctatgagtttgtcttagtcgtg 32450130  T
Q  192 ggtattttatttgactatgcatttgccttagtggctggttaataatatacttctctgtgttgccttagtggcaggataacatcatattgcattgttgtgc 291  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||| |||||||||||| |||||||||||||||||||||||||||    
T  32450129 ggtattttatttgactatgcatttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgc 32450030  T
Q  292 ctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgt 391  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||   ||||||||||||||||||||    
T  32450029 ctaagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcgggt---tatttctgtgtggtgcctgt 32449933  T
Q  392 gtggcgggatatatccggatcatgtagtat 421  Q
    ||||||||||||||||||||||||||||||    
T  32449932 gtggcgggatatatccggatcatgtagtat 32449903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 199 - 367
Target Start/End: Complemental strand, 10751464 - 10751297
Alignment:
Q  199 tatttgactatgcatttgccttagtggctggttaataatatacttctctgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtg 298  Q
    |||||| |||||  |||||||||||||||||||||||||||| |||| |||| |||||||||||| |||||||||||||||||||| |||||||| ||||    
T  10751464 tatttgtctatgagtttgccttagtggctggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgccttagtg 10751365  T
Q  299 gcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcggg 367  Q
    ||||| |||||||| ||||||||||||| |||| | |||||||||||||||||||||||||||||||||    
T  10751364 gcgggttttagtctgcattttcatgatcatgca-tggcatatgcatctgtgtggtgccttagtggcggg 10751297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 176 - 352
Target Start/End: Complemental strand, 26182566 - 26182392
Alignment:
Q  176 gtttgcctaagtggagggtattttatttgactatgcatttgccttagtggctggttaataatatacttctctgtgttgccttagtggcaggataacatca 275  Q
    |||||||| ||||| ||||||||||||||||||| | |||||||  ||||| ||||||||||||| ||||  ||  |||||||||||| |||||| ||||    
T  26182566 gtttgccttagtggcgggtattttatttgactatacgtttgcct--gtggcgggttaataatatatttcttggtcgtgccttagtggcgggataatatca 26182469  T
Q  276 tattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 352  Q
    |||||||||||||||||   ||||| ||||||||||||||||||||||||| |||||||   |||||||||||||||    
T  26182468 tattgcattgttgtgccactgtggcaggatttagtcttcattttcatgatcatgcattaatgtatgcatctgtgtgg 26182392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 229 - 367
Target Start/End: Complemental strand, 23260489 - 23260351
Alignment:
Q  229 gttaataatatacttctctgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtggc-gggatttagtcttcattttcatgatct 327  Q
    |||||||||||| || | |||| ||||||||||||||||||||||||| ||||||| ||||||||||||| | ||| |||||||| |||||||||||||     
T  23260489 gttaataatatatttttttgtggtgccttagtggcaggataacatcatgttgcattattgtgcctaagtgacggggttttagtctgcattttcatgatca 23260390  T
Q  328 tgcattagcatatgcatctgtgtggtgccttagtggcggg 367  Q
    |||| | |||||||||||||||||||||||||||||||||    
T  23260389 tgca-tggcatatgcatctgtgtggtgccttagtggcggg 23260351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 265 - 367
Target Start/End: Original strand, 34636555 - 34636656
Alignment:
Q  265 ggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggc 364  Q
    |||||||||||||||||||| |||||||| ||||||||| |||||| | |||||||||| || |||| | ||||||||||||||||||||||||||||||    
T  34636555 ggataacatcatattgcattattgtgccttagtggcgggttttagtgtgcattttcatgttcgtgca-tggcatatgcatctgtgtggtgccttagtggc 34636653  T
Q  365 ggg 367  Q
    |||    
T  34636654 ggg 34636656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 372 - 423
Target Start/End: Complemental strand, 10751246 - 10751195
Alignment:
Q  372 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtattt 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10751246 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtattt 10751195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 314 - 423
Target Start/End: Complemental strand, 13773172 - 13773067
Alignment:
Q  314 cattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcgggatatatccggatca 413  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||||  |||||||   |||| ||||||||||||| ||||||| ||  |||||||||||||    
T  13773172 cattttcatgatcatgcat-agcatatacatctgtgtggtgcctgtgtggcgg---attacttctgtgtggtgcttgtgtggtggattatatccggatca 13773077  T
Q  414 tgtagtattt 423  Q
    ||||||||||    
T  13773076 tgtagtattt 13773067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 293 - 386
Target Start/End: Original strand, 24163325 - 24163416
Alignment:
Q  293 taagtggcgggatttagtcttcatttt-catgatcttgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtg 386  Q
    ||||||||||||||||||||||||||| ||||||  |||||||||||||| |||||||||||| ||||||| | |   |||||||||||||||||    
T  24163325 taagtggcgggatttagtcttcatttttcatgattatgcattagcatatgtatctgtgtggtgtcttagtgacag---attatttctgtgtggtg 24163416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 372 - 423
Target Start/End: Original strand, 34636707 - 34636758
Alignment:
Q  372 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtattt 423  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34636707 tatttctgtgtggtgcctatgtggcgggatatatccggatcatgtagtattt 34636758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 331
Target Start/End: Original strand, 20555634 - 20555709
Alignment:
Q  256 ttagtggcaggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgca 331  Q
    |||||||| |||||| ||||||||||||||||||| ||| |||| |||||||||| |||||| |||| ||| ||||    
T  20555634 ttagtggcgggataatatcatattgcattgttgtgtctatgtggtgggatttagttttcattatcattatcatgca 20555709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 23260598 - 23260523
Alignment:
Q  49 gtggtattgggaaagaagtgttagattttgttgataaacaaaagaaatgaaaaataaagatatatgagttttatgaaa 126  Q
    |||||||||  ||||||||||||||||| | |||||||| ||| ||||||||| || ||| |||||||||||||||||    
T  23260598 gtggtattgttaaagaagtgttagattt-gctgataaactaaataaatgaaaa-tatagaaatatgagttttatgaaa 23260523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 370 - 419
Target Start/End: Complemental strand, 26182388 - 26182339
Alignment:
Q  370 attatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagt 419  Q
    |||||||||||||||||||| ||||| ||| |||||||||||||| ||||    
T  26182388 attatttctgtgtggtgcctatgtggtgggttatatccggatcatatagt 26182339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 400
Target Start/End: Complemental strand, 23260300 - 23260272
Alignment:
Q  372 tatttctgtgtggtgcctgtgtggcggga 400  Q
    |||||||||||||||||||||||||||||    
T  23260300 tatttctgtgtggtgcctgtgtggcggga 23260272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 25005374 - 25005426
Alignment:
Q  49 gtggtattgggaaagaagtgttagattttgttgataaacaaaagaaatgaaaa 101  Q
    |||||||||  |||||||||||||| |||| |||||||| ||| |||||||||    
T  25005374 gtggtattgttaaagaagtgttagactttgctgataaactaaataaatgaaaa 25005426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 4 - 421
Target Start/End: Complemental strand, 35762110 - 35761690
Alignment:
Q  4 gaatgacatttattttattttcctatgcatagatgnnnnnnnnnngtggtattgggaaagaagtgttagattttgttgataaacaaaagaaatgaaaaat 103  Q
    ||||||||||||||||||||| ||||||||| |||          |||||||||  || ||||||||||| ||||| ||||||| ||| ||||||||| |    
T  35762110 gaatgacatttattttatttttctatgcatatatgttttt-----gtggtattgttaatgaagtgttagactttgtagataaactaaataaatgaaaa-t 35762017  T
Q  104 aaagatatatgagttttatgaaaggattgactttttgttcaagtggacaatgatgtgttaatctctgactgggtttgccta------------agtggag 191  Q
    | ||| ||||| |||||||||||  |||   |||| ||||| |||||  ||||||||||||| | ||||||  ||||||||            |||||      
T  35762016 atagaaatatgtgttttatgaaaatatttcattttggttcatgtggatgatgatgtgttaatatttgactgtatttgcctatgagtttgccttagtggca 35761917  T
Q  192 ggtattttatttgactatgcatttgccttagtggctggttaataatatacttctctgtgttgccttagtggcaggataacatcatattgcattgttgtgc 291  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||| |||||||||||||||||||||||||| |||||||||||||    
T  35761916 ggtattttatttgactatgcatttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcaggataacatcatactgcattgttgtgc 35761817  T
Q  292 ctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgt 391  Q
    ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||   ||||||||||||||||||||    
T  35761816 ctaagtggcggaatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcgggt---tatttctgtgtggtgcctgt 35761720  T
Q  392 gtggcgggatatatccggatcatgtagtat 421  Q
    ||||||||||||||||||||||||||||||    
T  35761719 gtggcgggatatatccggatcatgtagtat 35761690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 152 - 371
Target Start/End: Complemental strand, 19198669 - 19198447
Alignment:
Q  152 aatgatgtgttaatctctgactgggtttgcctaagtggagggtattttatttgactatgcatttgccttagtggctggttaataatatacttctctgtgt 251  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||| || | ||||||||||||| |||| ||||     
T  19198669 aatgatgtgttaatctctgactgtgtttgcctgagtggcgggtattttatttgactatgcatttgccttaatgacgggttaataatatatttctttgtgg 19198570  T
Q  252 tgccttagtggcaggataaca---tcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgt 348  Q
    |||||||||||| ||||||||   ||||||||||||||||| |||||||||||| ||||| |||||||||| |||||| ||||||| |||||||||||||    
T  19198569 tgccttagtggcgggataacatcatcatattgcattgttgtacctaagtggcggaatttaatcttcatttttatgatcatgcattaacatatgcatctgt 19198470  T
Q  349 gtggtgccttagtggcgggttat 371  Q
    |||||||||  ||||||||||||    
T  19198469 gtggtgcctgtgtggcgggttat 19198447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 199 - 367
Target Start/End: Complemental strand, 37667082 - 37666915
Alignment:
Q  199 tatttgactatgcatttgccttagtggctggttaataatatacttctctgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtg 298  Q
    |||||| |||||  |||||||||||| | ||||||||||||| |||| |||| |||||||||||| |||||||||||||||||||| |||||||| ||||    
T  37667082 tatttgtctatgagtttgccttagtgacgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgccttagtg 37666983  T
Q  299 gcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcggg 367  Q
    ||||  |||||||| ||||||||||||| |||| |  ||||||||||||||||||||||||||||||||    
T  37666982 gcggattttagtctgcattttcatgatcatgca-tgtcatatgcatctgtgtggtgccttagtggcggg 37666915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 53 - 268
Target Start/End: Original strand, 16074936 - 16075150
Alignment:
Q  53 tattgggaaagaagtgttagattttgttgataaacaaaagaaatgaaaaataaagatatatgagttttatgaaaggattgactttttgttcaagtggaca 152  Q
    ||||||||||||||||||||||||| || |||||| ||||||||||||||||   | || ||||||| ||||||  ||||||||||  |||| ||||| |    
T  16074936 tattgggaaagaagtgttagattttttttataaactaaagaaatgaaaaatatgaaaatgtgagtttcatgaaaatattgacttttgattcatgtggata 16075035  T
Q  153 atgatgtgttaatctctgactgggtttgcctaagtggagggtattttatttgactatgcatttgccttagtggctggttaataatatacttctctgtgtt 252  Q
    ||||||||||||||||| |||| ||||| |||||||| ||||||||||||||| |||||| |||||||| |||| ||||||||  ||| | || |||| |    
T  16075036 atgatgtgttaatctcttactgtgtttgtctaagtggcgggtattttatttgattatgca-ttgccttaatggcgggttaatatcatattactttgtggt 16075134  T
Q  253 gccttagtggcaggat 268  Q
    |||| |||||| ||||    
T  16075135 gcctgagtggcgggat 16075150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 314 - 423
Target Start/End: Complemental strand, 18472677 - 18472572
Alignment:
Q  314 cattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcgggatatatccggatca 413  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||   ||||||||||||   |||||||||||||| ||||||||| |||||||||||||    
T  18472677 cattttcatgatcatgcat-agcatatgcatctgtgtggtgcctgtatggcgggttatt---tctgtgtggtgcctatgtggcgggttatatccggatca 18472582  T
Q  414 tgtagtattt 423  Q
    ||||||||||    
T  18472581 tgtagtattt 18472572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 372 - 421
Target Start/End: Complemental strand, 37666864 - 37666815
Alignment:
Q  372 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtat 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37666864 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtat 37666815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 372 - 421
Target Start/End: Complemental strand, 43407053 - 43407004
Alignment:
Q  372 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtat 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43407053 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtat 43407004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 251 - 367
Target Start/End: Original strand, 16075096 - 16075211
Alignment:
Q  251 ttgccttagtggcaggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgt 350  Q
    |||||||| |||| || ||| |||||||| | |||| |||||| |||||||||||||||  | ||||||||||||| |||| | ||| ||||||||||||    
T  16075096 ttgccttaatggcgggttaatatcatattactttgtggtgcctgagtggcgggatttaggatgcattttcatgatcatgca-tggcaaatgcatctgtgt 16075194  T
Q  351 ggtgccttagtggcggg 367  Q
    |||| ||||||||||||    
T  16075195 ggtgtcttagtggcggg 16075211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 288 - 367
Target Start/End: Complemental strand, 9537206 - 9537128
Alignment:
Q  288 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcggg 367  Q
    |||||| ||||||||| |||||||| ||||||||||||| |||||  |||||||||| ||||||||||||||||||||||    
T  9537206 gtgccttagtggcgggttttagtctacattttcatgatcatgcatg-gcatatgcatttgtgtggtgccttagtggcggg 9537128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 288 - 367
Target Start/End: Complemental strand, 43407182 - 43407104
Alignment:
Q  288 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcggg 367  Q
    |||||| ||||||||| |||||| | ||||||||||||| |||||  |||||||||||||||||||||||||||||||||    
T  43407182 gtgccttagtggcgggttttagtttgcattttcatgatcatgcatg-gcatatgcatctgtgtggtgccttagtggcggg 43407104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 372 - 420
Target Start/End: Original strand, 338628 - 338676
Alignment:
Q  372 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagta 420  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  338628 tatttctgtgtggtgcctgtgtggcgggttatatccggatcatgtagta 338676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 288 - 367
Target Start/End: Original strand, 338499 - 338577
Alignment:
Q  288 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcggg 367  Q
    |||||| ||||||||| |||||| | ||||||||||||| |||||   ||||||||||||||||||||||||||||||||    
T  338499 gtgccttagtggcgggttttagtttgcattttcatgatcatgcatgt-catatgcatctgtgtggtgccttagtggcggg 338577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 376 - 423
Target Start/End: Original strand, 6836422 - 6836469
Alignment:
Q  376 tctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtattt 423  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  6836422 tctgtgtggtgcctgtgtggcgggttatatccggatcatgtagtattt 6836469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 288 - 366
Target Start/End: Original strand, 8421953 - 8422030
Alignment:
Q  288 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcgg 366  Q
    |||||| || |||||| |||||||| ||||||||||||| |||||  |||||||||||| |||||||||||||||||||    
T  8421953 gtgccttagcggcgggttttagtctgcattttcatgatcatgcatg-gcatatgcatctatgtggtgccttagtggcgg 8422030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 293 - 355
Target Start/End: Original strand, 26317615 - 26317677
Alignment:
Q  293 taagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgc 355  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||| |||| |||| ||||    
T  26317615 taagtggcggaatttagtcttcattttcatgatcatgcattagcatatacatcagtgttgtgc 26317677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 258 - 369
Target Start/End: Original strand, 28561778 - 28561890
Alignment:
Q  258 agtggcaggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgca--tctgtgtggtgc 355  Q
    ||||||||| ||| |||||||| | |||| |||  |||||||||||||||| | ||||||||||||||| ||||| |  |||||||  ||||||||||||    
T  28561778 agtggcaggttaatatcatatttctttgtggtgtttaagtggcgggatttaattttcattttcatgatcatgcatga-tatatgcatttctgtgtggtgc 28561876  T
Q  356 cttagtggcgggtt 369  Q
    ||||||||| ||||    
T  28561877 cttagtggcaggtt 28561890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 363
Target Start/End: Original strand, 25921874 - 25921953
Alignment:
Q  283 ttgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtgg 363  Q
    |||| ||||||||||| |||||||| || | ||||||||||||| | ||| | ||||||||||||||||||||||||||||    
T  25921874 ttgtggtgcctaagtgacgggattttgtttacattttcatgatcatacatga-catatgcatctgtgtggtgccttagtgg 25921953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 305 - 367
Target Start/End: Complemental strand, 33007449 - 33007388
Alignment:
Q  305 tttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcggg 367  Q
    |||||||| ||||||||| ||| ||||| |||||||||||||||||||||| |||||||||||    
T  33007449 tttagtctacattttcataatcatgcat-agcatatgcatctgtgtggtgctttagtggcggg 33007388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 419
Target Start/End: Complemental strand, 19198474 - 19198431
Alignment:
Q  376 tctgtgtggtgcctgtgtggcgggatatatccggatcatgtagt 419  Q
    |||||||||||||||||||||||| |||||||||||||| ||||    
T  19198474 tctgtgtggtgcctgtgtggcgggttatatccggatcatatagt 19198431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 6836247 - 6836308
Alignment:
Q  242 ttctctgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtggcggg 303  Q
    |||| |||| |||||| ||||| ||  || ||||||||||||||||||||||||||||||||    
T  6836247 ttctatgtggtgcctttgtggcgggtaaatatcatattgcattgttgtgcctaagtggcggg 6836308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 6836413 - 6836449
Alignment:
Q  335 gcatatgcatctgtgtggtgccttagtggcgggttat 371  Q
    |||||||||||||||||||||||  ||||||||||||    
T  6836413 gcatatgcatctgtgtggtgcctgtgtggcgggttat 6836449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 178; Significance: 7e-96; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 49499198 - 49499625
Alignment:
Q  1 gtagaatgacatttattttattttcctatgcatagatgnnnnnnnnnngtggtattgggaaagaagtgttagattttgttgataaacaaaagaaatgaaa 100  Q
    ||||||||||||||||||||||||  |||||||| |||          |||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  49499198 gtagaatgacatttattttattttgatatgcatatatgtttttt----gtggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaa 49499293  T
Q  101 aataaagatatatgagttttatgaaaggattgactttttgttcaagtggacaatgatgtgttaatctctgactgggtttgccta------------agtg 188  Q
    | || ||| |||||||||||||||||  |||   |||| ||||| |||||  |||||||||||||  || | || |||||| ||            ||||    
T  49499294 a-tatagaaatatgagttttatgaaaatatttcattttggttcatgtggatgatgatgtgttaatacctaattgtgtttgcttatgaggttgccttagtg 49499392  T
Q  189 gagggtattttatttgactatgcatttgccttagtggctggttaataatatacttctctgtgttgccttagtggcaggataacatcatattgcattgttg 288  Q
    | |||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||| |||||||||||| |||| | ||||||||||||| |||    
T  49499393 gcgggtattttatttgactatgcatttgccttagtggcgggttaataatatatttctgtgtggtgccttagtggcgggatgatatcatattgcatttttg 49499492  T
Q  289 tgcctaagtggcgggatttagtcttcatt-ttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgc 387  Q
    |||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||  ||||||||   |||||||||||||||||    
T  49499493 tgcctaagtggctggatttagtcttcattgttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcggg---ttatttctgtgtggtgc 49499589  T
Q  388 ctgtgtggcgggatatatccggatcatgtagtattt 423  Q
    |||||||||||| ||||||| |||||||||| ||||    
T  49499590 ctgtgtggcgggttatatccagatcatgtagaattt 49499625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 250 - 423
Target Start/End: Complemental strand, 2761913 - 2761744
Alignment:
Q  250 gttgccttagtggcaggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtg 349  Q
    |||||||||||||  || | | ||||||||   |||| |||| ||||||| |||||||||  ||||||||||||||| |||||  |||||||||| ||||    
T  2761913 gttgccttagtggtgggttgatatcatattattttgtggtgcttaagtggtgggatttaggattcattttcatgatcatgcatg-gcatatgcatttgtg 2761815  T
Q  350 tggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtattt 423  Q
    |||||||||||||| |||   ||||| |||||||||||||  |||||||| |||||||| ||||| ||||||||    
T  2761814 tggtgccttagtggaggg---ttattcctgtgtggtgccttagtggcgggttatatccgaatcatttagtattt 2761744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 284 - 367
Target Start/End: Original strand, 40459338 - 40459420
Alignment:
Q  284 tgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcggg 367  Q
    |||||||||| ||||||||| |||||  | ||||||||||||| |||||   ||||||||||||||||||||||||||||||||    
T  40459338 tgttgtgccttagtggcgggttttaggttgcattttcatgatcatgcatgt-catatgcatctgtgtggtgccttagtggcggg 40459420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 372 - 419
Target Start/End: Original strand, 55162712 - 55162759
Alignment:
Q  372 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagt 419  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  55162712 tatttctgtgtggtgcctgtgtggcgggttatatccggatcatgtagt 55162759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 305 - 367
Target Start/End: Original strand, 55162562 - 55162623
Alignment:
Q  305 tttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcggg 367  Q
    |||||||| ||||||||||||| |||||  |||||||||||||||||||||||||||||||||    
T  55162562 tttagtctgcattttcatgatcatgcatg-gcatatgcatctgtgtggtgccttagtggcggg 55162623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 372 - 421
Target Start/End: Original strand, 40459471 - 40459520
Alignment:
Q  372 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtat 421  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  40459471 tatttctgtgtggtgtctgtgtggcgggttatatccggatcatgtagtat 40459520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 365
Target Start/End: Original strand, 13652928 - 13653002
Alignment:
Q  291 cctaagtggcgggatttagtctt-cattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcg 365  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||  | |||||||| ||||||||||||||||||||    
T  13652928 cctaagtggcgggttttagtcttgcattttcatgatcatgcatg-gtatatgcatttgtgtggtgccttagtggcg 13653002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 365
Target Start/End: Original strand, 13661053 - 13661127
Alignment:
Q  291 cctaagtggcgggatttagtctt-cattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcg 365  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||  | |||||||| ||||||||||||||||||||    
T  13661053 cctaagtggcgggttttagtcttgcattttcatgatcatgcatg-gtatatgcatttgtgtggtgccttagtggcg 13661127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 419
Target Start/End: Original strand, 69810 - 69853
Alignment:
Q  376 tctgtgtggtgcctgtgtggcgggatatatccggatcatgtagt 419  Q
    |||||||||||||||||||||||| |||||||||||||| ||||    
T  69810 tctgtgtggtgcctgtgtggcgggttatatccggatcatatagt 69853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 419
Target Start/End: Complemental strand, 28968925 - 28968878
Alignment:
Q  372 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagt 419  Q
    |||||||||||||||| ||||||||||| |||||||||||||| ||||    
T  28968925 tatttctgtgtggtgcatgtgtggcgggttatatccggatcatatagt 28968878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 367
Target Start/End: Complemental strand, 28969059 - 28968976
Alignment:
Q  288 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcat----tagcatatgcatctgtgtggtgccttagtggcggg 367  Q
    |||||| |||||  || |||| ||| ||||||||||||| |||||    | |||||||||||||||||||||||||||||||||    
T  28969059 gtgccttagtggtaggttttaatctgcattttcatgatcatgcatggcatggcatatgcatctgtgtggtgccttagtggcggg 28968976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 69629 - 69690
Alignment:
Q  242 ttctctgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtggcggg 303  Q
    |||| |||| |||||| ||||| ||  || ||||||||||||||||||||||||||||||||    
T  69629 ttctgtgtggtgcctttgtggcgggtaaatatcatattgcattgttgtgcctaagtggcggg 69690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 386
Target Start/End: Complemental strand, 42899960 - 42899892
Alignment:
Q  315 attttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtg 386  Q
    |||||||| ||| |||||||  ||||||||||||||||||| ||| ||||||   |||||||||||||||||    
T  42899960 attttcataatcatgcattaatatatgcatctgtgtggtgctttaatggcgg---attatttctgtgtggtg 42899892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 69782 - 69837
Alignment:
Q  315 attttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcgggttat 371  Q
    |||||||||||| |||||  |||||||||||||||||||||||  ||||||||||||    
T  69782 attttcatgatcatgcatg-gcatatgcatctgtgtggtgcctgtgtggcgggttat 69837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 399
Target Start/End: Original strand, 69703 - 69762
Alignment:
Q  344 tctgtgtggtgccttagtggcgggtt---attat-ttctgtgtggtgcctgtgtggcggg 399  Q
    ||||||||||||||||||||||||||   ||||| |||||||||||||||  ||||||||    
T  69703 tctgtgtggtgccttagtggcgggttacgattatattctgtgtggtgccttagtggcggg 69762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 28969246 - 28969213
Alignment:
Q  1 gtagaatgacatttattttattttcctatgcata 34  Q
    |||||||||||||||||||||||| |||||||||    
T  28969246 gtagaatgacatttattttattttgctatgcata 28969213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 173; Significance: 7e-93; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 21491560 - 21491136
Alignment:
Q  1 gtagaatgacatttattttattttcctatgcatagatgnnnnnnnnnngtggtattgggaaagaagtgttagattttgttgataaacaaaagaaatgaaa 100  Q
    ||||||||||||||||||||||||  |||||||| |||          |||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  21491560 gtagaatgacatttattttattttgatatgcatatatgtttttttt--gtggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaa 21491463  T
Q  101 aataaagatatatgagttttatgaaaggattgactttttgttcaagtggacaatgatgtgttaatctctgactgggtttgccta------------agtg 188  Q
    | || ||  |||||||||||||||||  |||   |||| ||||| |||||  ||||||||||||| ||| | || |||||| ||            ||||    
T  21491462 a-tatagtaatatgagttttatgaaaatatttcattttggttcatgtggatgatgatgtgttaatatcttattgtgtttgcttatgaggttgccttagtg 21491364  T
Q  189 gagggtattttatttgactatgcatttgccttagtggctggttaataatatacttctctgtgttgccttagtggcaggataacatcatattgcattgttg 288  Q
    | |||||||||||||||||||||||||||||||||||  ||||||||||||| |||| |||| |||||||||||| ||| || |||||||||||||||||    
T  21491363 gcgggtattttatttgactatgcatttgccttagtggtgggttaataatatatttctgtgtggtgccttagtggcgggagaatatcatattgcattgttg 21491264  T
Q  289 tgcctaagtggcgggatttagtcttcatt-ttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgc 387  Q
    |||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||  ||||||   | |||||||||||||||||    
T  21491263 tgcctaagtggctggatttagtcttcattgttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcg---tgttatttctgtgtggtgc 21491167  T
Q  388 ctgtgtggcgggatatatccggatcatgtag 418  Q
    |||||||||||| ||| ||||||||||||||    
T  21491166 ctgtgtggcgggttatttccggatcatgtag 21491136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 199 - 423
Target Start/End: Original strand, 22077977 - 22078198
Alignment:
Q  199 tatttgactatgcatttgccttagtggctggttaataatatacttctctgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtg 298  Q
    |||||||||||||||||||||||||||| |||||||||||||  ||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  22077977 tatttgactatgcatttgccttagtggcgggttaataatatatctctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtg 22078076  T
Q  299 gcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcgg 398  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||   | |||||| |||||||||||||||||||||    
T  22078077 gcgggatttagtcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcg---tgttatttatgtgtggtgcctgtgtggcgg 22078173  T
Q  399 gatatatccggatcatgtagtattt 423  Q
    |||||||||||||||| ||||||||    
T  22078174 gatatatccggatcatatagtattt 22078198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 18367393 - 18366970
Alignment:
Q  1 gtagaatgacatttattttattttcctatgcatagatgnnnnnnnnnngtggtattgggaaagaagtgttagattttgttgataaacaaaagaaatgaaa 100  Q
    ||||||||||||||||||||||||  |||||||| |||          |||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  18367393 gtagaatgacatttattttattttgatatgcatatatgttttttt---gtggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaa 18367297  T
Q  101 aataaagatatatgagttttatgaaaggattgactttttgttcaagtggacaatgatgtgttaatctctgactgggtttg------------cctaagtg 188  Q
    | || ||| ||||||| ||||| |||  |||   |||| |||||  ||||  |||||||||||||  |||| || |||||            ||| ||||    
T  18367296 a-tatagaaatatgagatttataaaaatatttcattttggttcatatggatgatgatgtgttaatacctgattgtgtttggttatgaggttgccttagtg 18367198  T
Q  189 gagggtattttatttgactatgcatttgccttagtggctggttaataatatacttctctgtgttgccttagtggcaggataacatcatattgcattgttg 288  Q
    | |||||||||| ||||||||||||||| ||||| ||| ||||||||||| | |||| |||| ||||||||||||||||||| |||||||||||||||||    
T  18367197 gcgggtattttaattgactatgcatttgtcttaggggcgggttaataatagatttctgtgtggtgccttagtggcaggataatatcatattgcattgttg 18367098  T
Q  289 tgcctaagtggcgggatttagtcttcatt-ttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgc 387  Q
    | |||||||||| ||||||| |||||||| |||||||||  ||||||||||||| || |||||||||| |  |||| |||   |||||||||||||||||    
T  18367097 tccctaagtggctggatttaatcttcattgttcatgatcacgcattagcatatgtatttgtgtggtgcatgggtggtggg---ttatttctgtgtggtgc 18367001  T
Q  388 ctgtgtggcgggatatatccggatcatgtag 418  Q
     ||||||||||| ||||||||||||||||||    
T  18367000 atgtgtggcgggttatatccggatcatgtag 18366970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 272 - 367
Target Start/End: Complemental strand, 11036178 - 11036083
Alignment:
Q  272 atcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcggg 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  11036178 atcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcatgcattagcatatgcatctctgtggtgccttagtggcggg 11036083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 283 - 423
Target Start/End: Complemental strand, 48653617 - 48653481
Alignment:
Q  283 ttgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgt 382  Q
    |||| ||||||||||||||||||| |   | ||||||||||||| ||||| | ||||||||||||||||||| ||  |||||||||||||   ||||||     
T  48653617 ttgtggtgcctaagtggcgggattcatgatccattttcatgatcatgcataa-catatgcatctgtgtggtgtctgtgtggcgggttatt---tctgtgc 48653522  T
Q  383 ggtgcctgtgtggcgggatatatccggatcatgtagtattt 423  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  48653521 ggtgcctgtgtggcgggttatatccggatcatgtagtattt 48653481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 265 - 367
Target Start/End: Complemental strand, 15873813 - 15873712
Alignment:
Q  265 ggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggc 364  Q
    |||||||||||||||||||| |||||||| ||||||||| |||||| | |||||||||| || |||| | ||||||||||||||||||||||||||||||    
T  15873813 ggataacatcatattgcattattgtgccttagtggcgggttttagtgtgcattttcatgttcgtgca-tggcatatgcatctgtgtggtgccttagtggc 15873715  T
Q  365 ggg 367  Q
    |||    
T  15873714 ggg 15873712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 372 - 421
Target Start/End: Complemental strand, 10288477 - 10288428
Alignment:
Q  372 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtat 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10288477 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtat 10288428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 288 - 367
Target Start/End: Complemental strand, 10288606 - 10288528
Alignment:
Q  288 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcggg 367  Q
    |||||| ||||||||| |||||| | ||||||||||||| |||||  |||||||||||||||||||||||||||||||||    
T  10288606 gtgccttagtggcgggttttagtttgcattttcatgatcatgcatg-gcatatgcatctgtgtggtgccttagtggcggg 10288528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 372 - 423
Target Start/End: Complemental strand, 15873661 - 15873610
Alignment:
Q  372 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtattt 423  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15873661 tatttccgtgtggtgcctgtgtggcgggatatatccggatcatgtagtattt 15873610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 288 - 367
Target Start/End: Original strand, 40106201 - 40106279
Alignment:
Q  288 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcggg 367  Q
    |||||| ||||||||  |||||||| ||||||||||||| |||||  |||||||||||||||||||||||||||||||||    
T  40106201 gtgccttagtggcggattttagtctgcattttcatgatcatgcatg-gcatatgcatctgtgtggtgccttagtggcggg 40106279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 367
Target Start/End: Complemental strand, 12196511 - 12196433
Alignment:
Q  288 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcggg 367  Q
    |||||| ||||||||  |||||||| ||||||||||||| | |||  |||||| ||||||||||||||||||||||||||    
T  12196511 gtgccttagtggcggactttagtctgcattttcatgatcatacatg-gcatattcatctgtgtggtgccttagtggcggg 12196433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 9993666 - 9993704
Alignment:
Q  272 atcatattgcattgttgtgcctaagtggcgggatttagt 310  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9993666 atcatattgcattgttgtgcctaagtggcgggatttagt 9993704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 363
Target Start/End: Complemental strand, 12911501 - 12911434
Alignment:
Q  295 agtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtgg 363  Q
    ||||||||| |||||||| ||||||||| ||| || ||  |||||||||||||||||||||||||||||    
T  12911501 agtggcgggttttagtctgcattttcataatcatgtatg-gcatatgcatctgtgtggtgccttagtgg 12911434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 419
Target Start/End: Complemental strand, 49170111 - 49169979
Alignment:
Q  295 agtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg-tgccttagtggcgggttat--------tatttctgtgtggt 385  Q
    ||||||||  |||||||| ||||||||||||| |||| | |||||||||||||||||| |||||||||||| ||  ||        ||||  ||||||||    
T  49170111 agtggcggattttagtctgcattttcatgatcatgca-tggcatatgcatctgtgtggatgccttagtggccgggaattgcaattatattaatgtgtggt 49170013  T
Q  386 gcctgtgtggcgggatatatccggatcatgtagt 419  Q
    || ||||||||||| |||||||||||||| ||||    
T  49170012 gcttgtgtggcgggttatatccggatcatatagt 49169979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 423
Target Start/End: Original strand, 9993756 - 9993893
Alignment:
Q  290 gcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcgggttattat----ttctgtgtgg- 384  Q
    ||||||||||||||||||||| |||||| |||| ||| |||| | |||||||||  | ||||||||||  ||| |||||||| ||    || | |||||     
T  9993756 gcctaagtggcgggatttagttttcattatcattatcatgca-tggcatatgcacgtttgtggtgcctgtgtgacgggttataattatattttttgtgga 9993854  T
Q  385 tgcctgtgtggcgggatatatccggatcatgtagtattt 423  Q
    | | ||||||||||| | |||||||||||||||||||||    
T  9993855 tacatgtgtggcgggttttatccggatcatgtagtattt 9993893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 49 - 367
Target Start/End: Original strand, 16975460 - 16975789
Alignment:
Q  49 gtggtattgggaaagaagtgttagattttgttgataaacaaaagaaatgaaaaataaagatatatgagttttatgaaaggattgactttttgttcaagtg 148  Q
    |||||||||  |||||||||||||| |||| |||||||| ||| ||||||||| || ||| |||||||||||||||||  |||    ||| ||||| |||    
T  16975460 gtggtattgttaaagaagtgttagactttgctgataaactaaataaatgaaaa-tatagaaatatgagttttatgaaaatatttcagtttggttcatgtg 16975558  T
Q  149 gacaatgatgtgttaatctctgact------------gggtttgcctaagtggagggtattttatttgactatgcatttgccttagtggctggttaataa 236  Q
    ||  ||||||||||||| | |||||            | |||||||| ||||| ||||||||||||||| ||||| |||||||||||||| |||||||||    
T  16975559 gatgatgatgtgttaatatgtgactatatttgcctatgagtttgccttagtggcgggtattttatttgattatgcgtttgccttagtggcgggttaataa 16975658  T
Q  237 tatacttctctgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtggc-gggatttagtcttcattttcatgatcttgcattag 335  Q
    |||| |||| |||| |||||||||||| |||||||||||||||||||| ||||||||||||||| ||| |||||||| ||||||||||||| | || | |    
T  16975659 tatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggggttttagtctgcattttcatgatcatcca-tgg 16975757  T
Q  336 catatgcatctgtgtggtgccttagtggcggg 367  Q
    ||||||||||||||||||||| ||||||||||    
T  16975758 catatgcatctgtgtggtgccatagtggcggg 16975789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 178 - 372
Target Start/End: Complemental strand, 11937756 - 11937561
Alignment:
Q  178 ttgcctaagtggagggtattttatttgactatgcatttgccttagtggctggttaataatatacttctctgtgttgccttagtggcaggataacatcata 277  Q
    |||||| |||||  ||||||||||||||||||||||||||||||||||| |||| |||||||| |||| |||| |||||||||||| |||||| ||||||    
T  11937756 ttgccttagtggcaggtattttatttgactatgcatttgccttagtggcaggttcataatatatttctgtgtggtgccttagtggcgggataatatcata 11937657  T
Q  278 ttgcattgttgtgcctaagtggcgggatttagtcttcatt-ttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcgggttatt 372  Q
    ||||||||||||||||||||||  ||||||||| |||||| || |||||| ||||||||||||||||| ||||||||||||  |||||||||||||    
T  11937656 ttgcattgttgtgcctaagtggttggatttagttttcattgtttatgatcatgcattagcatatgcatttgtgtggtgcctgtgtggcgggttatt 11937561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 199 - 367
Target Start/End: Complemental strand, 5004624 - 5004457
Alignment:
Q  199 tatttgactatgcatttgccttagtggctggttaataatatacttctctgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtg 298  Q
    |||||| |||||  |||||||||||||| ||||||||||||| |||| |||| |||||||||||| |||||||||||||||||||| |||||||| ||||    
T  5004624 tatttgtctatgagtttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgccttagtg 5004525  T
Q  299 gcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcggg 367  Q
    ||||| |||||||| ||||||||||||| |||| | |||||||||||||||||||||||||||||||||    
T  5004524 gcgggttttagtctgcattttcatgatcatgca-tggcatatgcatctgtgtggtgccttagtggcggg 5004457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 242 - 371
Target Start/End: Original strand, 9104525 - 9104654
Alignment:
Q  242 ttctctgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatg 341  Q
    |||| |||| |||||| ||||||||  || |||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  9104525 ttctgtgtggtgcctttgtggcaggtaaatatcatattgctttgttgtgcctaagtggcgtgatttagtcttcattttcatgatcatgcattagcatatg 9104624  T
Q  342 catctgtgtggtgccttagtggcgggttat 371  Q
    ||||||||||||||||  |||| |||||||    
T  9104625 catctgtgtggtgcctgtgtggtgggttat 9104654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 265 - 367
Target Start/End: Complemental strand, 46404439 - 46404338
Alignment:
Q  265 ggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggc 364  Q
    |||||||||||||||||||| |||||||| ||||||||| |||||| | |||||||||| |  |||| | ||||||||||||||||||||||||||||||    
T  46404439 ggataacatcatattgcattattgtgccttagtggcgggttttagtgtgcattttcatgtttgtgca-tggcatatgcatctgtgtggtgccttagtggc 46404341  T
Q  365 ggg 367  Q
    |||    
T  46404340 ggg 46404338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 372 - 423
Target Start/End: Complemental strand, 46404287 - 46404236
Alignment:
Q  372 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtattt 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46404287 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtattt 46404236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 372 - 421
Target Start/End: Complemental strand, 7336380 - 7336331
Alignment:
Q  372 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtat 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7336380 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtat 7336331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 288 - 367
Target Start/End: Complemental strand, 7336509 - 7336431
Alignment:
Q  288 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcggg 367  Q
    |||||| ||||||||| |||||| | ||||||||||||| |||||  |||||||||||||||||||||||||||||||||    
T  7336509 gtgccttagtggcgggttttagtttgcattttcatgatcatgcatg-gcatatgcatctgtgtggtgccttagtggcggg 7336431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 361
Target Start/End: Original strand, 8731155 - 8731269
Alignment:
Q  247 tgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatct 346  Q
    |||| |||||||| ||| || ||  |||||||||| ||||  ||  ||||||| || ||||||||||||||||||||||| ||||||||||||  |||||    
T  8731155 tgtggtgccttaggggcgggttagtatcatattgctttgtgatgtgtaagtggtggaatttagtcttcattttcatgatcatgcattagcataaacatct 8731254  T
Q  347 gtgtggtgccttagt 361  Q
     ||||||||||||||    
T  8731255 atgtggtgccttagt 8731269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 361
Target Start/End: Original strand, 9083042 - 9083156
Alignment:
Q  247 tgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatct 346  Q
    |||| |||||||| ||| || ||  |||||||||| ||||  ||  ||||||| || ||||||||||||||||||||||| ||||||||||||  |||||    
T  9083042 tgtggtgccttaggggcgggttagtatcatattgctttgtgatgtgtaagtggtggaatttagtcttcattttcatgatcatgcattagcataaacatct 9083141  T
Q  347 gtgtggtgccttagt 361  Q
     ||||||||||||||    
T  9083142 atgtggtgccttagt 9083156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 335 - 414
Target Start/End: Complemental strand, 17542425 - 17542349
Alignment:
Q  335 gcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcgggatatatccggatcat 414  Q
    ||||||| |||||||||||||||  |||||||||||||   |||||||||||||||||||||||  ||||||||||||||    
T  17542425 gcatatgtatctgtgtggtgcctgtgtggcgggttatt---tctgtgtggtgcctgtgtggcggtttatatccggatcat 17542349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 372 - 423
Target Start/End: Original strand, 16975840 - 16975891
Alignment:
Q  372 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtattt 423  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  16975840 tatttctgtgtggtgcctgtgtggcgggttatatccggatcatgtactattt 16975891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 423
Target Start/End: Original strand, 9104627 - 9104674
Alignment:
Q  376 tctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtattt 423  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||    
T  9104627 tctgtgtggtgcctgtgtggtgggttatatccggatcatgtagtattt 9104674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 11967954 - 11967862
Alignment:
Q  1 gtagaatgacatttattttattttcctatgcatagatgnnnnnnnnnngtggtattgggaaagaagtgttagattttgttgataaacaaaagaaatga 98  Q
    ||||||||||||||||||||||||  |||||||| |||          ||||||||||||||||||||||  ||||||||||||||| ||||||||||    
T  11967954 gtagaatgacatttattttattttgatatgcatatatgttttttt---gtggtattgggaaagaagtgtt--attttgttgataaactaaagaaatga 11967862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 17542561 - 17542500
Alignment:
Q  242 ttctctgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtggcggg 303  Q
    |||| |||| |||||| ||||||||  || ||||||||||||||||||| ||||||||||||    
T  17542561 ttctgtgtggtgcctttgtggcaggtaaatatcatattgcattgttgtgtctaagtggcggg 17542500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 367
Target Start/End: Complemental strand, 43277834 - 43277783
Alignment:
Q  315 attttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcggg 367  Q
    |||||||||||| | ||| | ||||||||||||||||||||||||||||||||    
T  43277834 attttcatgatcatacatga-catatgcatctgtgtggtgccttagtggcggg 43277783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 423
Target Start/End: Complemental strand, 5004401 - 5004366
Alignment:
Q  388 ctgtgtggcgggatatatccggatcatgtagtattt 423  Q
    |||||||||||| |||||||||||||||||||||||    
T  5004401 ctgtgtggcgggttatatccggatcatgtagtattt 5004366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 214 - 418
Target Start/End: Complemental strand, 4557850 - 4557646
Alignment:
Q  214 ttgccttagtggctggt--taataatatacttctctgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtggcgggatttagtc 311  Q
    ||||||||||||| |||  |||||||||| |||| |||| ||||||||||||  ||||| ||||||||||||||||||||||||||||| ||||||||||    
T  4557850 ttgccttagtggcgggtattaataatatatttctgtgtggtgccttagtggcgcgataatatcatattgcattgttgtgcctaagtggctggatttagtc 4557751  T
Q  312 ttcatt-ttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcgggatatatccgga 410  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||||||  ||||||||   ||||||||||||||||||||||||||||| |||||| |||    
T  4557750 ttcattgttcatgatcatgcattagcatatgcatctctgtggtgcctgtgtggcggg---ttatttctgtgtggtgcctgtgtggcgggttatatctgga 4557654  T
Q  411 tcatgtag 418  Q
     |||||||    
T  4557653 ccatgtag 4557646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 265 - 367
Target Start/End: Original strand, 537188 - 537289
Alignment:
Q  265 ggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggc 364  Q
    |||||||||||||||||||| |||||||| ||||||||| |||||| | |||||||||| || |||| | ||||||||||||||||||||||||||||||    
T  537188 ggataacatcatattgcattattgtgccttagtggcgggttttagtgtgcattttcatgttcgtgca-tggcatatgcatctgtgtggtgccttagtggc 537286  T
Q  365 ggg 367  Q
    |||    
T  537287 ggg 537289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 312 - 419
Target Start/End: Complemental strand, 25101671 - 25101568
Alignment:
Q  312 ttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcgggatatatccggat 411  Q
    ||||||||||||||| |||||  | |||||||||||||||||||||  |||||||||||||   ||||||||||||||||||| |||| |||||||||||    
T  25101671 ttcattttcatgatcatgcatg-gtatatgcatctgtgtggtgcctgtgtggcgggttatt---tctgtgtggtgcctgtgtgacgggttatatccggat 25101576  T
Q  412 catgtagt 419  Q
    ||| ||||    
T  25101575 catatagt 25101568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 312 - 419
Target Start/End: Complemental strand, 25160764 - 25160661
Alignment:
Q  312 ttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcgggatatatccggat 411  Q
    ||||||||||||||| |||||  | |||||||||||||||||||||  |||||||||||||   ||||||||||||||||||| |||| |||||||||||    
T  25160764 ttcattttcatgatcatgcatg-gtatatgcatctgtgtggtgcctgtgtggcgggttatt---tctgtgtggtgcctgtgtgacgggttatatccggat 25160669  T
Q  412 catgtagt 419  Q
    ||| ||||    
T  25160668 catatagt 25160661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 372 - 421
Target Start/End: Original strand, 537340 - 537389
Alignment:
Q  372 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtat 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  537340 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtat 537389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 4557990 - 4557914
Alignment:
Q  49 gtggtattgggaaagaagtgttagattttgttgataaacaaaagaaatgaaaaataaagatatatgagttttatgaaa 126  Q
    ||||||||| |||||||||||| |||||||||||||||| ||||||||| |||||| | | |||||||||||||||||    
T  4557990 gtggtattgagaaagaagtgttggattttgttgataaactaaagaaatg-aaaatatataaatatgagttttatgaaa 4557914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 288 - 366
Target Start/End: Original strand, 40691266 - 40691343
Alignment:
Q  288 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcgg 366  Q
    |||||| |||| |||| |||||||| ||||||||||||| ||||   ||||||||||||||||||||||||| ||||||    
T  40691266 gtgccttagtgacgggttttagtctgcattttcatgatcatgcaag-gcatatgcatctgtgtggtgccttattggcgg 40691343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 366
Target Start/End: Original strand, 104702 - 104753
Alignment:
Q  315 attttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcgg 366  Q
    |||||||||||| || |||||||||||||||| |||||||||||| ||||||    
T  104702 attttcatgatcatgtattagcatatgcatctctgtggtgccttaatggcgg 104753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 419
Target Start/End: Original strand, 6309214 - 6309257
Alignment:
Q  376 tctgtgtggtgcctgtgtggcgggatatatccggatcatgtagt 419  Q
    ||||||||||| |||||||||||| |||||||||||||| ||||    
T  6309214 tctgtgtggtgtctgtgtggcgggttatatccggatcatatagt 6309257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 367
Target Start/End: Original strand, 30910190 - 30910267
Alignment:
Q  288 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcggg 367  Q
    |||||| |||||||| ||||||||| ||||| ||||||| |||||  |||||||||||||||||||  |||||| |||||    
T  30910190 gtgccttagtggcgg-atttagtctgcatttccatgatcatgcatg-gcatatgcatctgtgtggtctcttagtagcggg 30910267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 399
Target Start/End: Original strand, 6309107 - 6309166
Alignment:
Q  344 tctgtgtggtgccttagtggcgggttattat----ttctgtgtggtgcctgtgtggcggg 399  Q
    ||||||||||||||||||||||||||| |||    |||||||||||||||  ||||||||    
T  6309107 tctgtgtggtgccttagtggcgggttactattatattctgtgtggtgccttagtggcggg 6309166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 284
Target Start/End: Original strand, 6309116 - 6309184
Alignment:
Q  215 tgccttagtggctggttaataatatacttctctgtgttgccttagtggcaggataacatcatattgcatt 284  Q
    |||||||||||| ||||| || |||| |||| |||| |||||||||||| || ||| |||||||||||||    
T  6309116 tgccttagtggcgggttactattata-ttctgtgtggtgccttagtggcgggttaatatcatattgcatt 6309184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 352
Target Start/End: Original strand, 42861801 - 42861869
Alignment:
Q  283 ttgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 352  Q
    |||| ||||||| ||||||||||| |   | ||||||||||||| ||||| |||||||||||||||||||    
T  42861801 ttgtggtgcctatgtggcgggattcatgatccattttcatgatcatgcat-agcatatgcatctgtgtgg 42861869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 6309186 - 6309241
Alignment:
Q  315 attttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcgggttat 371  Q
    |||||||||||| |||||  |||||||||||||||||||| ||  ||||||||||||    
T  6309186 attttcatgatcatgcatg-gcatatgcatctgtgtggtgtctgtgtggcgggttat 6309241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 7e-53; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 272 - 423
Target Start/End: Complemental strand, 40841309 - 40841161
Alignment:
Q  272 atcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcgggttat 371  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||    |    
T  40841309 atcatattgcattgttgtgcctatgttgcgggatttagtcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcgg---ct 40841213  T
Q  372 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtattt 423  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  40841212 tatttctatgtggtgcctgtgtggcgggttatatccggatcatgtagtattt 40841161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 288 - 399
Target Start/End: Original strand, 44436513 - 44436620
Alignment:
Q  288 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgc 387  Q
    |||||| ||||| ||| ||||||||  |||||||||||| ||| || |||||||||||||||||||||||  |||||||| ||||   ||||||||||||    
T  44436513 gtgccttagtggtgggttttagtctctattttcatgatcatgc-ttggcatatgcatctgtgtggtgcctgtgtggcgggatatt---tctgtgtggtgc 44436608  T
Q  388 ctgtgtggcggg 399  Q
    ||||||||||||    
T  44436609 ctgtgtggcggg 44436620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 315 - 419
Target Start/End: Complemental strand, 22816064 - 22815964
Alignment:
Q  315 attttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcgggatatatccggatcat 414  Q
    |||||||||||| |||||  ||||||||||||||| |||||||  || ||||||||||   |||||||||||| ||||||||||| |||||| |||||||    
T  22816064 attttcatgatcatgcatg-gcatatgcatctgtgcggtgcctgtgtagcgggttatt---tctgtgtggtgcttgtgtggcgggttatatctggatcat 22815969  T
Q  415 gtagt 419  Q
     ||||    
T  22815968 atagt 22815964  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 305 - 367
Target Start/End: Complemental strand, 41958220 - 41958159
Alignment:
Q  305 tttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcggg 367  Q
    |||||||| ||||||||||||| |||||  |||||||||||||||||||||||||||||||||    
T  41958220 tttagtctgcattttcatgatcatgcatg-gcatatgcatctgtgtggtgccttagtggcggg 41958159  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 398
Target Start/End: Complemental strand, 22635774 - 22635692
Alignment:
Q  312 ttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcgg 398  Q
    ||||||||||||||| |||||  |||||||||||||||||||||||  |||||| |   |||||||||| |||||| ||||||||||    
T  22635774 ttcattttcatgatcatgcatg-gcatatgcatctgtgtggtgcctgtgtggcgag---ttatttctgtatggtgcatgtgtggcgg 22635692  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 414
Target Start/End: Original strand, 44436597 - 44436664
Alignment:
Q  344 tctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcgggatatatccggatcat 414  Q
    ||||||||||||||  ||||||||||||| ||    ||||||| |||||||||||| ||||||||||||||    
T  44436597 tctgtgtggtgcctgtgtggcgggttattttta---tgtggtgtctgtgtggcgggttatatccggatcat 44436664  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 35840682 - 35840720
Alignment:
Q  272 atcatattgcattgttgtgcctaagtggcgggatttagt 310  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  35840682 atcatattgcattgttgtgcctaagtggcaagatttagt 35840720  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 419
Target Start/End: Complemental strand, 3189148 - 3189107
Alignment:
Q  378 tgtgtggtgcctgtgtggcgggatatatccggatcatgtagt 419  Q
    |||||||||| ||||||||||| |||||||||||||| ||||    
T  3189148 tgtgtggtgcttgtgtggcgggttatatccggatcatttagt 3189107  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 419
Target Start/End: Complemental strand, 22635691 - 22635642
Alignment:
Q  370 attatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagt 419  Q
    ||||||||| |||||||| ||||||||||| ||||||| |||||| ||||    
T  22635691 attatttctatgtggtgcatgtgtggcgggttatatccagatcatatagt 22635642  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 35840736 - 35840780
Alignment:
Q  288 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcat 332  Q
    ||||||||||||||||||||||| |||||| |||| ||| |||||    
T  35840736 gtgcctaagtggcgggatttagttttcattatcattatcatgcat 35840780  T

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Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 252 - 423
Target Start/End: Complemental strand, 12774243 - 12774074
Alignment:
Q  252 tgccttagtggcaggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtg 351  Q
    |||||||||||| |||||| |||||||  | |||| ||||||||||||||||||| |   ||||||||||||||| |||||  |||||||||||||||||    
T  12774243 tgccttagtggcgggataatatcatatctctttgtggtgcctaagtggcgggattcatgattcattttcatgatcatgcatc-gcatatgcatctgtgtg 12774145  T
Q  352 gtgcctta--gtggcgggttattatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtattt 423  Q
    ||||||||  ||||||||||||| ||   ||||||||| ||||||||||| |||||| ||||||||||||||||    
T  12774144 gtgccttatagtggcgggttattttt---gtgtggtgcatgtgtggcgggttatatctggatcatgtagtattt 12774074  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 252 - 367
Target Start/End: Complemental strand, 28266963 - 28266848
Alignment:
Q  252 tgccttagtggcaggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtg 351  Q
    |||||||||||| | |||| ||||||||||||||||||||||  |||||||||||||||||||||||| |||||| |||| | |||||||||||| ||||    
T  28266963 tgccttagtggcggcataatatcatattgcattgttgtgcctgtgtggcgggatttagtcttcattttaatgatcatgca-tggcatatgcatctatgtg 28266865  T
Q  352 g-tgccttagtggcggg 367  Q
    | || ||||||||||||    
T  28266864 gatgtcttagtggcggg 28266848  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 288 - 367
Target Start/End: Complemental strand, 18292509 - 18292431
Alignment:
Q  288 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcggg 367  Q
    |||||| ||||||||| |||||||| ||||||||||||| |||||  |||||||||||||||||||||||||||||||||    
T  18292509 gtgccttagtggcgggttttagtctgcattttcatgatcatgcatg-gcatatgcatctgtgtggtgccttagtggcggg 18292431  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 288 - 363
Target Start/End: Complemental strand, 40729242 - 40729168
Alignment:
Q  288 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtgg 363  Q
    |||||| ||||||||| |||||||| ||||||||||||| |||||  |||||||||||||||||||||||||||||    
T  40729242 gtgccttagtggcgggttttagtctgcattttcatgatcatgcatg-gcatatgcatctgtgtggtgccttagtgg 40729168  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 288 - 367
Target Start/End: Complemental strand, 41340068 - 41339990
Alignment:
Q  288 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcggg 367  Q
    |||||| ||||||||| |||||||||||||||||||| | |||||  ||||||||| |||||||||||||||||||||||    
T  41340068 gtgccttagtggcgggttttagtcttcattttcatgaccatgcatg-gcatatgcacctgtgtggtgccttagtggcggg 41339990  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 372 - 420
Target Start/End: Original strand, 40448001 - 40448049
Alignment:
Q  372 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagta 420  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  40448001 tatttctgtgtggtgcctgtgtggcgggttatatccggatcatgtagta 40448049  T

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Target: chr2; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 288 - 367
Target Start/End: Original strand, 40447872 - 40447950
Alignment:
Q  288 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcggg 367  Q
    |||||| ||||||||| |||||| | ||||||||||||| |||||   ||||||||||||||||||||||||||||||||    
T  40447872 gtgccttagtggcgggttttagtttgcattttcatgatcatgcatgt-catatgcatctgtgtggtgccttagtggcggg 40447950  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 333
Target Start/End: Original strand, 29270991 - 29271079
Alignment:
Q  245 tctgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcatt 333  Q
    |||||| |||||||||||  || ||| |||||||||| |||  ||||||||||| ||||||||| | ||||||||||||||| ||||||    
T  29270991 tctgtggtgccttagtggtgggttaatatcatattgctttggggtgcctaagtgacgggatttaattttcattttcatgatcatgcatt 29271079  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 419
Target Start/End: Original strand, 44789030 - 44789073
Alignment:
Q  376 tctgtgtggtgcctgtgtggcgggatatatccggatcatgtagt 419  Q
    |||||||||||||||||||||||| |||||||||||||| ||||    
T  44789030 tctgtgtggtgcctgtgtggcgggttatatccggatcatatagt 44789073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 364
Target Start/End: Complemental strand, 34397632 - 34397559
Alignment:
Q  288 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggc 364  Q
    |||||| ||||||||| |||||||| ||||  ||||||| |||||  | ||||||||||||||||||||||||||||    
T  34397632 gtgccttagtggcgggttttagtctgcatt--catgatcatgcatg-gtatatgcatctgtgtggtgccttagtggc 34397559  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 354
Target Start/End: Complemental strand, 35670572 - 35670502
Alignment:
Q  283 ttgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtg 354  Q
    |||| ||||||| ||||||||||| |   | ||||||||||||| ||||| |||||||||||||||||||||    
T  35670572 ttgtggtgcctatgtggcgggattcatgatccattttcatgatcatgcat-agcatatgcatctgtgtggtg 35670502  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 419
Target Start/End: Complemental strand, 40729113 - 40729066
Alignment:
Q  372 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagt 419  Q
    ||||||||||||||| ||||||||| || |||||||||||||| ||||    
T  40729113 tatttctgtgtggtgtctgtgtggcaggttatatccggatcatatagt 40729066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 303
Target Start/End: Original strand, 44788879 - 44788910
Alignment:
Q  272 atcatattgcattgttgtgcctaagtggcggg 303  Q
    ||||||||||||||||||||||||||||||||    
T  44788879 atcatattgcattgttgtgcctaagtggcggg 44788910  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 423
Target Start/End: Complemental strand, 35670501 - 35670425
Alignment:
Q  344 tctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtattt 423  Q
    ||||||||||| ||  |||||||||||||   | |||||| ||||||||||||| | |||||  ||||||||||||||||    
T  35670501 tctgtgtggtgtctgtgtggcgggttatt---tatgtgtgatgcctgtgtggcgagttatatttggatcatgtagtattt 35670425  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 423
Target Start/End: Complemental strand, 36731911 - 36731866
Alignment:
Q  378 tgtgtggtgcctgtgtggcgggatatatccggatcatgtagtattt 423  Q
    |||||| |||||||||| |||| |||||| ||||||||||||||||    
T  36731911 tgtgtgctgcctgtgtgacgggttatatctggatcatgtagtattt 36731866  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 44789021 - 44789057
Alignment:
Q  335 gcatatgcatctgtgtggtgccttagtggcgggttat 371  Q
    |||||||||||||||||||||||  ||||||||||||    
T  44789021 gcatatgcatctgtgtggtgcctgtgtggcgggttat 44789057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 199 - 310
Target Start/End: Original strand, 9170 - 9281
Alignment:
Q  199 tatttgactatgcatttgccttagtggctggttaataatatacttctctgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtg 298  Q
    |||||| |||||  |||||||||||||| ||||||||||||| |||| |||| |||||||||||| |||||||||||||||||||| |||||||| ||||    
T  9170 tatttgtctatgagtttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgccttagtg 9269  T
Q  299 gcgggatttagt 310  Q
    ||||| ||||||    
T  9270 gcgggttttagt 9281  T

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Target: scaffold0013 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 315 - 419
Target Start/End: Complemental strand, 242783 - 242683
Alignment:
Q  315 attttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcgggatatatccggatcat 414  Q
    |||||||||||||||||| ||||||||||| ||||||||||||  |||||||||||||   |||||||||||||||||||||||| ||||||| ||||||    
T  242783 attttcatgatcttgcat-agcatatgcatatgtgtggtgcctgtgtggcgggttatt---tctgtgtggtgcctgtgtggcgggttatatccagatcat 242688  T
Q  415 gtagt 419  Q
     ||||    
T  242687 atagt 242683  T

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Target: scaffold0041 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 288 - 423
Target Start/End: Complemental strand, 33100 - 32967
Alignment:
Q  288 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggtgccttagtggcgggttattat----ttctgtgtg 383  Q
    ||||||||||||||||||||||| |||||| |||||      ||| | ||||||||||||||||||||||  ||| ||||| || ||    |||||||||    
T  33100 gtgcctaagtggcgggatttagttttcattatcatg------catga-catatgcatctgtgtggtgcctgtgtgacgggtcataattatattctgtgtg 33008  T
Q  384 g-tgcctgtgtggcgggatatatccggatcatgtagtattt 423  Q
    | ||||||||||||||| |||||||||||||||||||||||    
T  33007 gatgcctgtgtggcgggttatatccggatcatgtagtattt 32967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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