View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10641_low_20 (Length: 279)
Name: NF10641_low_20
Description: NF10641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10641_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 40835921 - 40835653
Alignment:
| Q |
1 |
tgtcacaatggcaaaagacattgaagccgaacctcaaggtggtgtaccacacaaggactaccatgacccaccaccagctccactctttgacaccgctgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40835921 |
tgtcacaatggcaaaagacattgaagccgaacctcaaggtggtgtaccacacaaggactaccatgacccaccaccagctccactctttgacaccgctgaa |
40835822 |
T |
|
| Q |
101 |
cttggccagtggtctttctacagagccgtcatcgccgagttcgtcgccactctcctcttcctctatgtcaccgttttaaccgtcattggctacaacgctc |
200 |
Q |
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||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40835821 |
cttggtcagtggtctttctacagagccctcatcgcagagttcgtcgccactctcctcttcctctatgtcaccgttttaaccgtcattggctacaacgctc |
40835722 |
T |
|
| Q |
201 |
aaactgatccagctcataatggtaccaactgtgacggtgtcggcatcctcggcatcgcttgggcctttg |
269 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40835721 |
aaactgatccagctcataatggcaccaactgtgacggtgtcggcatcctcggcatcgcttgggcctttg |
40835653 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 55220562 - 55220623
Alignment:
| Q |
110 |
tggtctttctacagagccgtcatcgccgagttcgtcgccactctcctcttcctctatgtcac |
171 |
Q |
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||||||||||||||||| ||||||| |||||| | ||||| |||||||||||||| ||||| |
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| T |
55220562 |
tggtctttctacagagctctcatcgctgagttcatagccaccctcctcttcctctacgtcac |
55220623 |
T |
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