View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10641_low_23 (Length: 262)
Name: NF10641_low_23
Description: NF10641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10641_low_23 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 80836 - 81070
Alignment:
| Q |
16 |
agacaagagacaagagagggactaggtgaacggg-ccaatttcatgatagtggaagtgcattttggatagatagtattcttcctaggctcattcatgttg |
114 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
80836 |
agacaagagacaagagagggactaggtgaacggggccaatttcatgatagtggaagtgcattttggatagatagtattcttcctaggctcattcatgttg |
80935 |
T |
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| Q |
115 |
cacaaagagattgaattttgtaggccatttattctccaacaaatgagacaatgccatgtgttttcaaggacaacatgatattcaaagaaatgtttaaggg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
80936 |
cacaaagagattgaattttgtaggccatttattctccaacaaatgagacaatgccatgtgttttcaaggacaacatggtattcaaagaaatgtttaaggg |
81035 |
T |
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| Q |
215 |
gtcatgtggcacatgcatctatctgaagacaatac |
249 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
81036 |
gtcatgtggcacatgcatctatctgaagacaatac |
81070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 40885448 - 40885214
Alignment:
| Q |
16 |
agacaagagacaagagagggactaggtgaacggg-ccaatttcatgatagtggaagtgcattttggatagatagtattcttcctaggctcattcatgttg |
114 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40885448 |
agacaagagacaagagagggactaggtgaacggggccaatttcatgatagtggaagtgcattttggatagatagtattcttcctaggctcattcatgttg |
40885349 |
T |
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| Q |
115 |
cacaaagagattgaattttgtaggccatttattctccaacaaatgagacaatgccatgtgttttcaaggacaacatgatattcaaagaaatgtttaaggg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40885348 |
cacaaagagattgaattttgtaggccatttattctccaacaaatgagacaatgccatgtgttttcaaggacaacatggtattcaaagaaatgtttaaggg |
40885249 |
T |
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| Q |
215 |
gtcatgtggcacatgcatctatctgaagacaatac |
249 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
40885248 |
gtcatgtggcacatgcatctatctgaagacaatac |
40885214 |
T |
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