View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10641_low_24 (Length: 262)
Name: NF10641_low_24
Description: NF10641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10641_low_24 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 255
Target Start/End: Complemental strand, 2144736 - 2144505
Alignment:
| Q |
20 |
agtatgtgtagccacaaatctatatactatatgctattagaattggaccatacattagatccatgtttgaactttatgacccatatgtcgtgtcctttga |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
2144736 |
agtatgtgtagccacaaatctatatactatatgctattagaattggaccatacattagatccatgttagaactttatgacccatacgtcgtgtcctttga |
2144637 |
T |
|
| Q |
120 |
caaaaacacctaactaatatggctctatttcgatcaaggtatgaatggcctagttaaagaggttgtgatcatctagttcaatttggtttaagacaaacta |
219 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2144636 |
caaagacacctaactaatatggctctatttcgatcaaggtatgaatggcctagttaaagaggttgtgatcatctagttcaatttggtttaagacaaaata |
2144537 |
T |
|
| Q |
220 |
tacaaaccctgatatatatggtagaaacctatgctt |
255 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||| |
|
|
| T |
2144536 |
tgcaaaccctg----atatggtagaaacctatgctt |
2144505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 2139381 - 2139335
Alignment:
| Q |
36 |
aatctatatactatatgctattagaattggaccatacattagatccatg |
84 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2139381 |
aatctatatactat--gctattagaattggaccatacattagatccatg |
2139335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 208
Target Start/End: Complemental strand, 2139319 - 2139228
Alignment:
| Q |
110 |
tgtcctttgacaaaaacacctaactaatatggctctatttcgatcaaggtatgaatggcctagttaaagaggttgtgatcatctagttcaatttggttt |
208 |
Q |
| |
|
||||||||||||||| | |||||| | ||| | |||||| ||||||||||| || |||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
2139319 |
tgtcctttgacaaaagctcctaacaa---tggttatatttcaatcaaggtatg----gcttagttaaagaggttgtgaccctctagttcaatttggttt |
2139228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University