View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10641_low_28 (Length: 250)
Name: NF10641_low_28
Description: NF10641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10641_low_28 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 15595165 - 15595401
Alignment:
| Q |
13 |
taggatgaggaagtcaacatatatgggatagaattagtaagcactcagaaaaaagtggattatgtatggaactaaggacttggaacgcttagaatggatg |
112 |
Q |
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| T |
15595165 |
taggatgaggaagtcaacatatatgggatagagttagtaagcactcagaaaacagtggattatgtatggaactaaggactttgaacgcttagaatggatg |
15595264 |
T |
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| Q |
113 |
acattctgatgactggtatgttaatttaagcaactaggggataagtaaactcttgggaggtatacgaagttaacttcttatgaggtaactaagtaagcaa |
212 |
Q |
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|||||||||||||| ||| ||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
15595265 |
acattctgatgactagtacgttaagttaagcaactaggtgataagtaaactcttgggtggtatacgaagttaacttcttatgaggtaactaagtaagcaa |
15595364 |
T |
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| Q |
213 |
cataagttagccaaactctgtcagattgaccgcacctc |
250 |
Q |
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||| ||||||||||||||||||||| |||||||||||| |
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| T |
15595365 |
cat-agttagccaaactctgtcagagtgaccgcacctc |
15595401 |
T |
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