View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10641_low_3 (Length: 435)
Name: NF10641_low_3
Description: NF10641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10641_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 53 - 428
Target Start/End: Complemental strand, 33355328 - 33354950
Alignment:
| Q |
53 |
tatctgatgttcatgtctgtgtctgtgtttgaatgattgtgaacgatgtctaatatgtttagcattcgacacccacatgatacacacatgta--tacgta |
150 |
Q |
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| T |
33355328 |
tatctgatgttcatgtgtgtgtctgtgtttgaatgattgtgaacgatgtctaatatgtgtaacgctcgacacccacatgatacacacatgtagttacata |
33355229 |
T |
|
| Q |
151 |
acttaagttaagttcaannnnnnn-ccaattattatatgatgttcatgtttatgtccgtgtttgatactatgttggttataatttgtttaaattttaaag |
249 |
Q |
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| T |
33355228 |
acttaagttaagttcaattttttttccaattattatatgatgttcatgtctatgtccgtgtttgatgctatgttggttataatttgtttaaattttaaag |
33355129 |
T |
|
| Q |
250 |
aaactttgatgttgatgcagagacatatgcaacttggtgggttgcctcctagaaccagctacggtaagtgaatctgaaccaaatgcatcgatatattatt |
349 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33355128 |
aaacttagatgttgatgcagagacatatgcaacttggtgggttgcctccttgaaccagctacggtaagtgaatctgaaccaaatgcatcgatatattatt |
33355029 |
T |
|
| Q |
350 |
tgttctattgcattgcagggtggtccatagagagagcagctagccctgacaatattggattgggtggcctttgcttctc |
428 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
33355028 |
tgttctattgcattgcagggtggtccacagagagagcagctagccctcacaatattggattgggtggcctttgtttctc |
33354950 |
T |
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