View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10641_low_31 (Length: 246)
Name: NF10641_low_31
Description: NF10641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10641_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 52446098 - 52445884
Alignment:
| Q |
1 |
attgcgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacaccaataataaaataatgaacatcaacataactatacatta |
100 |
Q |
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| T |
52446098 |
attgtgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacgccaataataaaataatgaacatcaacacaactatacatta |
52445999 |
T |
|
| Q |
101 |
tgattgtgaacagagcatcaactcaaccaaagcattatacaacaacacatgaagtcatgaagagtaaatcaaacatcaacatcatcatacgtgtcacggt |
200 |
Q |
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| T |
52445998 |
tgattgtgaacagagtatcaactcgaccaaagcattatacaacaacacat--------gaagagtaaatcaaacatcaacatcatcatacgtgtcagggt |
52445907 |
T |
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| Q |
201 |
tcaaactcatatcatgaggttcg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
52445906 |
tcaaactcatatcatgaggttcg |
52445884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 52447031 - 52446890
Alignment:
| Q |
7 |
attgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacaccaataataaaataatgaacatcaacataactatacattatgattg |
106 |
Q |
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||||||||||| |||||||| |||||| |||||||| ||| ||||||||||||||||||||| || |||||||||||||||||| |||||||| ||||| |
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| T |
52447031 |
attgaaattgt-aatcatccctaaattaaaacaataaaaacgtgtaaataaacaccaataatagaacaatgaacatcaacataaccatacattacgattg |
52446933 |
T |
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| Q |
107 |
tgaacagagcatcaactcaaccaaagcattatacaacaacaca |
149 |
Q |
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| T |
52446932 |
tggatagagcatcaactcaattgaagcattatacaacaacaca |
52446890 |
T |
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