View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10641_low_32 (Length: 246)
Name: NF10641_low_32
Description: NF10641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10641_low_32 |
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| [»] scaffold1030 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 14278351 - 14278562
Alignment:
| Q |
20 |
tcaaggaagatatacaaagccatttttgagtgatttttaatcaaaccaatcaaggttctattgattttcaaataagaatgaaggcgttgagatggagaat |
119 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14278351 |
tcaaggaggatatacaaagccatttttgagtgatttttaatcaaaccaatcaaggttctattgattttcaaataagaatgaaggcgttgagatggagaat |
14278450 |
T |
|
| Q |
120 |
caccactaatagttccaaatggttcactcagattttgatccactaatagttgcttatattttgttgtatgatactcccattcatggtaagcatcatcacc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14278451 |
caccactaatagttccaaatggttcactcagattttgatccactaatagttccttatattttgttgtatgatactcccattcatggtaagcatcatcacc |
14278550 |
T |
|
| Q |
220 |
taccaacctgct |
231 |
Q |
| |
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|||||||||||| |
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| T |
14278551 |
taccaacctgct |
14278562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 14258511 - 14258722
Alignment:
| Q |
20 |
tcaaggaagatatacaaagccatttttgagtgatttttaatcaaaccaatcaaggttctattgattttcaaataagaatgaaggcgttgagatggagaat |
119 |
Q |
| |
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|||||||| |||||||||| ||||||||| ||||||||||||||| |||||||| ||||||| ||||||||||||||||| ||||| || | ||||| |
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| T |
14258511 |
tcaaggaaaatatacaaaggcatttttgaatgatttttaatcaaagaaatcaaggatctattgcttttcaaataagaatgatggcgtcgaaagaaagaat |
14258610 |
T |
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| Q |
120 |
caccactaatagttccaaatggttcactcagattttgatccactaatagttgcttatattttgttgtatgatactcccattcatggtaagcatcatcacc |
219 |
Q |
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| T |
14258611 |
cgtcactaatagttccacatgatctactcaaattatgctccactaatagtcctttatattttgttgtatgctactcccattcatggtaagcattattacc |
14258710 |
T |
|
| Q |
220 |
taccaacctgct |
231 |
Q |
| |
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|||||||||||| |
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| T |
14258711 |
taccaacctgct |
14258722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 14283830 - 14284040
Alignment:
| Q |
20 |
tcaaggaagatatacaaagccatttttgagtgatttttaatcaaaccaatcaaggttctattgattttcaaataagaatgaaggcgttgagatggagaat |
119 |
Q |
| |
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|||||||| ||||||||||||||||| || ||||||||||| ||| ||||||||| ||||||| |||| |||||||||||| ||||| || | |||| |
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| T |
14283830 |
tcaaggaaaatatacaaagccatttt-gaatgatttttaataaaagcaatcaaggatctattgctttttaaataagaatgatggcgtcgaaaaaaggaat |
14283928 |
T |
|
| Q |
120 |
caccactaatagttccaaatggttcactcagattttgatccactaatagttgcttatattttgttgtatgatactcccattcatggtaagcatcatcacc |
219 |
Q |
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||||||||||||||||| | | | |||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
14283929 |
caccactaatagttccagaagatctcctcaaattctgatccactaatagtcctttatattttgttgtatgatactcccattcatggtaagcatcattacc |
14284028 |
T |
|
| Q |
220 |
taccaacctgct |
231 |
Q |
| |
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||||||| |||| |
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| T |
14284029 |
taccaacatgct |
14284040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1030 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold1030
Description:
Target: scaffold1030; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 3139 - 2928
Alignment:
| Q |
20 |
tcaaggaagatatacaaagccatttttgagtgatttttaatcaaaccaatcaaggttctattgattttcaaataagaatgaaggcgttgagatggagaat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3139 |
tcaaggaagatatacaaagccatttttgagtgatttttaatcaaaccaatcaaggttctattgattttcaaataagaatgaaggcgttgagatggagaat |
3040 |
T |
|
| Q |
120 |
caccactaatagttccaaatggttcactcagattttgatccactaatagttgcttatattttgttgtatgatactcccattcatggtaagcatcatcacc |
219 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3039 |
caccactaatagttccaaatggttcactcagattttgatccactaatagttccttacattttgttgtatgatacttccattcatggtaagcatcatcacc |
2940 |
T |
|
| Q |
220 |
taccaacctgct |
231 |
Q |
| |
|
|||||||||||| |
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| T |
2939 |
taccaacctgct |
2928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 35138610 - 35138821
Alignment:
| Q |
20 |
tcaaggaagatatacaaagccatttttgagtgatttttaatcaaaccaatcaaggttctattgattttcaaataagaatgaaggcgttgagatggagaat |
119 |
Q |
| |
|
||||| || ||||| | |||||||||||| ||||||||||||||| || ||| || |||||||||| ||||||||||||||| |||||| ||| ||||| |
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| T |
35138610 |
tcaagaaaaatatatagagccatttttgaatgatttttaatcaaatcagtcatggatctattgattctcaaataagaatgaattcgttgaaatgaagaat |
35138709 |
T |
|
| Q |
120 |
caccactaatagttccaaatggttcactcagattttgatccactaatagttgcttatattttgttgtatgatactcccattcatggtaagcatcatcacc |
219 |
Q |
| |
|
||||||| ||||||| |||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35138710 |
taccactagtagttcctaatgagtcactcagattctgatccactaatagttccttatattttgttgtatgatactcccattcatggtaagcatcattacc |
35138809 |
T |
|
| Q |
220 |
taccaacctgct |
231 |
Q |
| |
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|| ||||||||| |
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| T |
35138810 |
tagcaacctgct |
35138821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 35131302 - 35131513
Alignment:
| Q |
20 |
tcaaggaagatatacaaagccatttttgagtgatttttaatcaaaccaatcaaggttctattgattttcaaataagaatgaaggcgttgagatggagaat |
119 |
Q |
| |
|
||||| || ||||| | |||||||||||| ||||||||||||||| || ||| || |||||||||| ||||||||||||||| |||||| ||| ||||| |
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| T |
35131302 |
tcaagaaaaatatatagagccatttttgaatgatttttaatcaaatcagtcatggatctattgattctcaaataagaatgaattcgttgaaatgaagaat |
35131401 |
T |
|
| Q |
120 |
caccactaatagttccaaatggttcactcagattttgatccactaatagttgcttatattttgttgtatgatactcccattcatggtaagcatcatcacc |
219 |
Q |
| |
|
||||||| ||||||| |||| || |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
35131402 |
taccactagtagttcctaatgagtcgctcagattccgatccactaatagttccttatattttgttgtatgatactcccattcatggtaagcatcattacc |
35131501 |
T |
|
| Q |
220 |
taccaacctgct |
231 |
Q |
| |
|
|| ||||||||| |
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|
| T |
35131502 |
tagcaacctgct |
35131513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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