View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10641_low_38 (Length: 235)

Name: NF10641_low_38
Description: NF10641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10641_low_38
NF10641_low_38
[»] chr4 (10 HSPs)
chr4 (13-217)||(2825605-2825809)
chr4 (78-217)||(31050717-31050856)
chr4 (96-218)||(19815278-19815401)
chr4 (56-217)||(8254889-8255053)
chr4 (56-217)||(8268307-8268471)
chr4 (83-214)||(53823479-53823611)
chr4 (120-217)||(30964368-30964467)
chr4 (78-211)||(25753058-25753192)
chr4 (55-140)||(46698918-46699003)
chr4 (96-154)||(6600065-6600123)
[»] chr1 (14 HSPs)
chr1 (75-217)||(46814522-46814664)
chr1 (56-217)||(7857517-7857679)
chr1 (56-211)||(24658793-24658949)
chr1 (113-217)||(27031895-27031999)
chr1 (99-217)||(24684533-24684652)
chr1 (56-217)||(24449985-24450149)
chr1 (54-141)||(38544869-38544957)
chr1 (96-211)||(9313350-9313466)
chr1 (99-217)||(41920359-41920478)
chr1 (56-217)||(30685959-30686123)
chr1 (56-134)||(27032002-27032080)
chr1 (120-207)||(5389486-5389575)
chr1 (169-217)||(6583271-6583319)
chr1 (100-179)||(27102098-27102178)
[»] chr8 (8 HSPs)
chr8 (56-211)||(15821440-15821596)
chr8 (120-217)||(36630764-36630863)
chr8 (96-217)||(10248608-10248730)
chr8 (99-217)||(32066350-32066470)
chr8 (99-217)||(34389060-34389180)
chr8 (99-217)||(24995450-24995570)
chr8 (137-211)||(37986919-37986994)
chr8 (83-140)||(17720837-17720894)
[»] chr3 (13 HSPs)
chr3 (56-217)||(23328405-23328565)
chr3 (56-217)||(40023627-40023789)
chr3 (120-217)||(2392561-2392660)
chr3 (120-217)||(2394308-2394407)
chr3 (66-207)||(25647557-25647700)
chr3 (54-217)||(34475809-34475975)
chr3 (151-217)||(14193900-14193966)
chr3 (171-217)||(45398776-45398822)
chr3 (83-211)||(4463997-4464125)
chr3 (120-193)||(20611710-20611785)
chr3 (96-217)||(37123286-37123408)
chr3 (177-217)||(19176488-19176528)
chr3 (162-206)||(45163824-45163868)
[»] chr2 (7 HSPs)
chr2 (56-211)||(7874155-7874311)
chr2 (55-217)||(14106579-14106743)
chr2 (147-217)||(14405155-14405224)
chr2 (99-217)||(39338920-39339040)
chr2 (57-217)||(17105275-17105437)
chr2 (170-211)||(387152-387193)
chr2 (78-211)||(41086849-41086981)
[»] chr5 (8 HSPs)
chr5 (54-217)||(7392086-7392251)
chr5 (83-203)||(8297359-8297480)
chr5 (83-217)||(13954289-13954423)
chr5 (99-213)||(29087387-29087503)
chr5 (135-217)||(698304-698387)
chr5 (120-217)||(34378025-34378124)
chr5 (96-213)||(14302489-14302607)
chr5 (112-217)||(33258937-33259043)
[»] chr7 (16 HSPs)
chr7 (60-217)||(34389829-34389988)
chr7 (103-217)||(41089803-41089919)
chr7 (96-207)||(35745892-35746003)
chr7 (154-218)||(25160778-25160842)
chr7 (155-217)||(6584873-6584935)
chr7 (56-211)||(3866979-3867136)
chr7 (78-217)||(16954539-16954679)
chr7 (83-217)||(44755518-44755652)
chr7 (59-210)||(33434975-33435128)
chr7 (78-209)||(16828999-16829131)
chr7 (120-217)||(38306188-38306287)
chr7 (57-217)||(47325940-47326103)
chr7 (99-211)||(3419717-3419831)
chr7 (100-193)||(6716815-6716909)
chr7 (117-217)||(8745078-8745179)
chr7 (78-211)||(42533313-42533447)
[»] chr6 (5 HSPs)
chr6 (83-210)||(15132585-15132712)
chr6 (83-217)||(16510356-16510492)
chr6 (96-217)||(3880638-3880760)
chr6 (96-217)||(32935394-32935516)
chr6 (78-196)||(20701879-20701998)
[»] scaffold0050 (1 HSPs)
scaffold0050 (66-208)||(36580-36724)
[»] scaffold1613 (1 HSPs)
scaffold1613 (54-141)||(1148-1236)
[»] scaffold0200 (1 HSPs)
scaffold0200 (79-217)||(19269-19409)
[»] scaffold0499 (1 HSPs)
scaffold0499 (96-130)||(6470-6504)
[»] scaffold0063 (1 HSPs)
scaffold0063 (96-217)||(58031-58153)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 2825605 - 2825809
Alignment:
Q  13 agcaaaggtactcatatgatacaagaaaatttaaatatcaattgtcttacatattgtgtgttgtgtccgatgggccgattatatttgctttgagattgag 112  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  2825605 agcaatggtactcatatgatacaagaaaagttaaatatcaattgtcttacatattgtgtgttgtgtccggtgggccgattatatttgcttcgagattgag 2825704  T
Q  113 agttggtgtctagctgcaatcatgtttgacttgatatggtgttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtgga 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  2825705 agttggtgtctagctgcaatcatgtttgacttgatatggtgttctctggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtccggtggg 2825804  T
Q  213 ccgat 217  Q
    |||||    
T  2825805 ccgat 2825809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 78 - 217
Target Start/End: Complemental strand, 31050856 - 31050717
Alignment:
Q  78 tccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtgttctatggtgtaccgagggcgagg 177  Q
    |||| ||||||| |||  ||||||| ||||  | |||| |||| |||||||||||| ||||||||||||||||||||||| || ||||||| ||||||||    
T  31050856 tccggtgggccggttacttttgcttcgagaccgggagtcggtgactagctgcaatcctgtttgacttgatatggtgttctttgatgtaccgggggcgagg 31050757  T
Q  178 ggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
    ||||| || ||||||||||||||||||||||||| |||||    
T  31050756 ggtgccctactgatttggttctaaagtctggtgggccgat 31050717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 96 - 218
Target Start/End: Complemental strand, 19815401 - 19815278
Alignment:
Q  96 tttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggt-gttctatggtgtaccgagggcgaggggtgctctgctgatttg 194  Q
    ||||||| ||||| |||||| ||||||||||||||||| |||||| |||||||| ||  || | ||||  |||| ||| ||||||||| || ||| ||||    
T  19815401 tttgcttcgagatcgagagtcggtgtctagctgcaatcttgtttggcttgatattgtatttttctggttgaccgggggtgaggggtgcccttctgttttg 19815302  T
Q  195 gttctaaagtctggtggaccgatt 218  Q
    || |||||||||||||||||||||    
T  19815301 gtcctaaagtctggtggaccgatt 19815278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 56 - 217
Target Start/End: Original strand, 8254889 - 8255053
Alignment:
Q  56 gtcttacatattgtgtgttg-tgtccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcat-gtttgacttgatatggtg 153  Q
    |||||||||||||||||||| | | || ||||||| || | || |||| ||||| | |||| |  ||||||||| |||| | |||| ||||||| ||||     
T  8254889 gtcttacatattgtgtgttggttttcggtgggccggttcttttggcttcgagatcgggagtcgaggtctagctgtaatctttgtttcacttgatttggtt 8254988  T
Q  154 tt-ctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
    || || |||||||||| ||||||||||||| ||||| ||||||| |||||||||||||| |||||    
T  8254989 tttctctggtgtaccgggggcgaggggtgccctgctaatttggtactaaagtctggtgggccgat 8255053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 56 - 217
Target Start/End: Original strand, 8268307 - 8268471
Alignment:
Q  56 gtcttacatattgtgtgttg-tgtccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcat-gtttgacttgatatggtg 153  Q
    |||||||||||||||||||| | | || ||||||| || | || |||| ||||| | |||| |  ||||||||| |||| | |||| ||||||| ||||     
T  8268307 gtcttacatattgtgtgttggttttcggtgggccggttcttttggcttcgagatcgggagtcgaggtctagctgtaatctttgtttcacttgatttggtt 8268406  T
Q  154 tt-ctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
    || || |||||||||| ||||||||||||| ||||| ||||||| |||||||||||||| |||||    
T  8268407 tttctctggtgtaccgggggcgaggggtgccctgctaatttggtactaaagtctggtgggccgat 8268471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 214
Target Start/End: Complemental strand, 53823611 - 53823479
Alignment:
Q  83 tgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtgtt-ctatggtgtaccgagggcgaggggtg 181  Q
    ||||||| |||  ||||||| ||||| | |||| |||||||| |||||||| || ||| |||||  ||||||| || ||||||||||  || ||||||||    
T  53823611 tgggccggttacttttgcttcgagatcgggagtcggtgtctaactgcaatcttgcttggcttgacttggtgtttctctggtgtaccggaggtgaggggtg 53823512  T
Q  182 ctctgctgatttggttctaaagtctggtggacc 214  Q
    | || ||||||||||  ||||||||||||||||    
T  53823511 cccttctgatttggtcataaagtctggtggacc 53823479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 30964368 - 30964467
Alignment:
Q  120 gtctagctgcaatcat-gtttgacttgatatggtgtt-ctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
    |||||||||||||| | |||||||||||| |||| || || |||||||||||||||||||||||| ||||| ||||||| ||| | |||| ||| |||||    
T  30964368 gtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgagggcgaggggtgccctgctaatttggtactataatctgatgggccgat 30964467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 25753058 - 25753192
Alignment:
Q  78 tccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtg-ttctatggtgtaccgagggcgag 176  Q
    |||||||||| | |||  ||||||| ||||| | |||| ||||||||||||||||| |||||| | |||| ||||| |||| ||||||||||  || |||    
T  25753058 tccgatgggcagcttaattttgcttcgagatcgggagtcggtgtctagctgcaatcttgtttggcgtgatgtggtgtttctctggtgtaccggaggtgag 25753157  T
Q  177 gggtgctctgctgatttggttctaaagtctggtgg 211  Q
    | |||| |  || ||||||| ||||||||||||||    
T  25753158 gagtgcccgtcttatttggtcctaaagtctggtgg 25753192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 140
Target Start/End: Complemental strand, 46699003 - 46698918
Alignment:
Q  55 tgtcttacatattgtgtgttgtgtccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgtttg 140  Q
    |||||||||||||||||| ||  | |  |||||||||||  ||||||| ||||| | ||||||||||||||||||| || ||||||    
T  46699003 tgtcttacatattgtgtgctggattctgtgggccgattacttttgcttcgagatcgggagttggtgtctagctgcagtcttgtttg 46698918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 154
Target Start/End: Complemental strand, 6600123 - 6600065
Alignment:
Q  96 tttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtgt 154  Q
    ||||||||||||| | |||||||||||||| ||||||| |||||| || | ||||||||    
T  6600123 tttgctttgagatcgggagttggtgtctagttgcaatcttgtttggctagttatggtgt 6600065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 75 - 217
Target Start/End: Complemental strand, 46814664 - 46814522
Alignment:
Q  75 gtgtccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtgttctatggtgtaccgagggcg 174  Q
    ||||||||||||||| |||| |||| || ||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||| ||||     
T  46814664 gtgtccgatgggccggttatttttgattcgagatcgagagttggtgtctagttgcaatcctgtttgacttgatatggtgttctctggtgtaccgggggca 46814565  T
Q  175 aggggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
    |||||||| |||||||||||||||||||||||||||| |||||    
T  46814564 aggggtgccctgctgatttggttctaaagtctggtgggccgat 46814522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 56 - 217
Target Start/End: Original strand, 7857517 - 7857679
Alignment:
Q  56 gtcttacatattgtgtgttg-tgtccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtgt 154  Q
    ||||||||||||||||| || | |||  |||||||||||| ||||||| ||||| | |||||||||||||| |||||| ||||||||||||||||| |||    
T  7857517 gtcttacatattgtgtgctggtttccagtgggccgattatttttgcttcgagatcgggagttggtgtctagttgcaattatgtttgacttgatatgttgt 7857616  T
Q  155 tctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
    ||| |||||||| | ||||||||||||| |||||||||||||||||||||||||||| |||||    
T  7857617 tctctggtgtactgggggcgaggggtgccctgctgatttggttctaaagtctggtgggccgat 7857679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 56 - 211
Target Start/End: Original strand, 24658793 - 24658949
Alignment:
Q  56 gtcttacatattgtgtgttgt-gtccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtgt 154  Q
    ||||||||| ||||||| ||  ||||| ||||||| |||| |||||||  |||| | |||||||||||||||||||||||||||||||||||||||||||    
T  24658793 gtcttacattttgtgtgctggagtccggtgggccggttatttttgcttcaagatcgggagttggtgtctagctgcaatcatgtttgacttgatatggtgt 24658892  T
Q  155 tctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtgg 211  Q
    ||| ||||||| || |||| |||||||| ||||||||||||||||||||||||||||    
T  24658893 tctctggtgtatcgggggcaaggggtgccctgctgatttggttctaaagtctggtgg 24658949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 113 - 217
Target Start/End: Complemental strand, 27031999 - 27031895
Alignment:
Q  113 agttggtgtctagctgcaatcatgtttgacttgatatggtgttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtgga 212  Q
    |||||||||||| |||||||| ||||||| ||||||||||||||| |||||||||| |||  |||||||| ||||||||||||||||||||||| ||||     
T  27031999 agttggtgtctacctgcaatcctgtttgagttgatatggtgttctctggtgtaccgggggaaaggggtgccctgctgatttggttctaaagtctagtggg 27031900  T
Q  213 ccgat 217  Q
    |||||    
T  27031899 ccgat 27031895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 24684652 - 24684533
Alignment:
Q  99 gctttgagattgagagttggtgtctagctgcaatcat-gtttgacttgatatggtgttctatggtgtaccgagggcgaggggtgctctgctgatttggtt 197  Q
    |||| ||||| | |||| || ||||||||| |||| | |||||||||||| |||| |||| |||||||||| ||||||||||||| || || ||||| ||    
T  24684652 gcttcgagatcgggagtcggggtctagctgtaatctttgtttgacttgatttggttttctctggtgtaccgggggcgaggggtgccctactaatttgatt 24684553  T
Q  198 ctaaagtctggtggaccgat 217  Q
    |||||||||||||| |||||    
T  24684552 ctaaagtctggtgggccgat 24684533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 217
Target Start/End: Complemental strand, 24450149 - 24449985
Alignment:
Q  56 gtcttacatattgtgtgttg-tgtccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcat-gtttgacttgatatggtg 153  Q
    |||||||||||| ||||||| | | |||||||||||||   || |||| ||||| | |||| || |||||||||||||| | |||||||||| | ||||     
T  24450149 gtcttacatattatgtgttggttttcgatgggccgattcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttggtttggtt 24450050  T
Q  154 tt-ctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
    || || |||||||||| ||||||||||||| |||||  |||||| ||| ||| |||||| |||||    
T  24450049 tttctctggtgtaccgggggcgaggggtgccctgctattttggtactatagtttggtgggccgat 24449985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 38544957 - 38544869
Alignment:
Q  54 ttgtcttacatattgtgtgttgtgtccga-tgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgtttga 141  Q
    ||||||||||||||||||| ||  | | | |||||||||||  ||||||| ||||||| |||||||||||||||||||||| |||||||    
T  38544957 ttgtcttacatattgtgtgctggattctagtgggccgattacttttgcttcgagattgggagttggtgtctagctgcaatcttgtttga 38544869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 211
Target Start/End: Complemental strand, 9313466 - 9313350
Alignment:
Q  96 tttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtg-ttctatggtgtaccgagggcgaggggtgctctgctgatttg 194  Q
    ||||||| ||||| | |||||||||||||||||||||  |||||| | |||| ||||| |||| | ||||| || | | ||||||||| || ||||||||    
T  9313466 tttgcttcgagatcgggagttggtgtctagctgcaattttgtttgccgtgatttggtgtttctctcgtgtatcgggcgtgaggggtgcccttctgatttg 9313367  T
Q  195 gttctaaagtctggtgg 211  Q
    || ||||||||| ||||    
T  9313366 gtcctaaagtctagtgg 9313350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 217
Target Start/End: Original strand, 41920359 - 41920478
Alignment:
Q  99 gctttgagattgagagttggtgtctagctgcaatcat-gtttgacttgatatggtgtt-ctatggtgtaccgagggcgaggggtgctctgctgatttggt 196  Q
    |||| ||||| | |||| || |||||||||||||| | |||||||||||| |||| || || |||||||| | ||||||||||||| ||||| |||||||    
T  41920359 gcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtactg-gggcgaggggtgccctgctaatttggt 41920457  T
Q  197 tctaaagtctggtggaccgat 217  Q
     ||| |||||||||| |||||    
T  41920458 actacagtctggtgggccgat 41920478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 217
Target Start/End: Complemental strand, 30686123 - 30685959
Alignment:
Q  56 gtcttacatattgtgtgttg-tgtccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcat-gtttgacttgatatggtg 153  Q
    |||||||||||||||||||| | | || ||||||| ||   || |||| ||||| | |||| |  ||||| |||||||| | |||||||||||| ||||     
T  30686123 gtcttacatattgtgtgttggttttcggtgggccggttcatttggcttcgagatcgggagtcgaggtctaactgcaatccttgtttgacttgatttggtt 30686024  T
Q  154 tt-ctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
    || || |||||||||  ||||||||||||| ||||| ||||||| ||| ||||| |||| |||||    
T  30686023 tttctctggtgtacctggggcgaggggtgccctgctaatttggtactatagtcttgtgggccgat 30685959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 27032080 - 27032002
Alignment:
Q  56 gtcttacatattgtgtg-ttgtgtccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatca 134  Q
    ||||||||||||||||| | ||||||||| |||||||||| ||||||| ||||| |  |||| ||||||| |||||||||    
T  27032080 gtcttacatattgtgtgctggtgtccgatcggccgattatttttgcttcgagatcggaagtt-gtgtctacctgcaatca 27032002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 207
Target Start/End: Complemental strand, 5389575 - 5389486
Alignment:
Q  120 gtctagctgcaatcat-gtttgacttgatatggtgtt-ctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctg 207  Q
    |||||||||||||| | |||||||||||| || | || || |||||||||| ||||||||||||| | ||| ||||||| ||| ||||||    
T  5389575 gtctagctgcaatctttgtttgacttgatttgatttttctctggtgtaccgggggcgaggggtgcccagctaatttggtactatagtctg 5389486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 6583319 - 6583271
Alignment:
Q  169 agggcgaggggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
    |||| |||||||||  | |||||||||| ||||||||||||||||||||    
T  6583319 agggtgaggggtgcctttctgatttggtcctaaagtctggtggaccgat 6583271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 27102098 - 27102178
Alignment:
Q  100 ctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtg-ttctatggtgtaccgagggcgagggg 179  Q
    |||||||||||  ||| ||||||| ||||||||| | |||| | |||| ||||| |||| |||||||||||||| ||||||    
T  27102098 ctttgagattggaagtcggtgtctggctgcaatcttatttggcgtgatttggtgtttctctggtgtaccgagggtgagggg 27102178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 56 - 211
Target Start/End: Complemental strand, 15821596 - 15821440
Alignment:
Q  56 gtcttacatattgtgtgttg-tgtccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtgt 154  Q
    |||||||||||||||||||| | || | |||||||||||| ||| ||||||||| |  |||||||| |||||| ||||| |||||| |||||||||||||    
T  15821596 gtcttacatattgtgtgttggtatctggtgggccgattattttttctttgagatcggaagttggtgcctagctacaatcctgtttggcttgatatggtgt 15821497  T
Q  155 tctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtgg 211  Q
    ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15821496 tctctggtgtaccgagggcgaggggtgccctgctgatttggttctaaagtctggtgg 15821440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 36630764 - 36630863
Alignment:
Q  120 gtctagctgcaatcat-gtttgacttgatatggtgtt-ctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
    |||||||||||||| | |||||||||||| |||| || || |||||||||| ||||||||||||| ||||| |||||||||||||||||||||| |||||    
T  36630764 gtctagctgcaatctttgtttgacttgatttggtttttctttggtgtaccgggggcgaggggtgccctgctaatttggttctaaagtctggtgggccgat 36630863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 217
Target Start/End: Complemental strand, 10248730 - 10248608
Alignment:
Q  96 tttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtg-ttctatggtgtaccgagggcgaggggtgctctgctgatttg 194  Q
    ||||||| ||||| | |||| ||||||||||||||||  |||||| |||||| ||||| |||| |||||||||| ||| ||||||||  || || ||||     
T  10248730 tttgcttcgagatcgggagtcggtgtctagctgcaattttgtttggcttgatttggtgtttctctggtgtaccgggggtgaggggtgtccttctaatttt 10248631  T
Q  195 gttctaaagtctggtggaccgat 217  Q
    || ||||| | ||||||||||||    
T  10248630 gtcctaaaatttggtggaccgat 10248608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 32066470 - 32066350
Alignment:
Q  99 gctttgagattgagagttggtgtctagctgcaatcat-gtttgacttgatatggtgtt-ctatggtgtaccgagggcgaggggtgctctgctgatttggt 196  Q
    |||||||||| | || | || |||||| ||||||| | |||||||||||| |||| || || | |||||||| ||||||||||||| ||||| |||||||    
T  32066470 gctttgagatcgggattcggggtctagttgcaatctttgtttgacttgatttggtttttctctagtgtaccgggggcgaggggtgccctgctaatttggt 32066371  T
Q  197 tctaaagtctggtggaccgat 217  Q
     ||| |||||||||| |||||    
T  32066370 gctatagtctggtgggccgat 32066350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 34389180 - 34389060
Alignment:
Q  99 gctttgagattgagagttggtgtctagctgcaatcat-gtttgacttgatatggtgtt-ctatggtgtaccgagggcgaggggtgctctgctgatttggt 196  Q
    |||| ||||| | |||| || |||||||||||||  | |||||||||||| |||| || || |||||||||  ||||||||||||| ||||| |||||||    
T  34389180 gcttcgagatcgggagtcggggtctagctgcaatttttgtttgacttgatttggtttttctctggtgtaccaggggcgaggggtgccctgctaatttggt 34389081  T
Q  197 tctaaagtctggtggaccgat 217  Q
     ||| |||||||||| |||||    
T  34389080 actatagtctggtgggccgat 34389060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 24995570 - 24995450
Alignment:
Q  99 gctttgagattgagagttggtgtctagctgcaatcat-gtttgacttgatatggtgtt-ctatggtgtaccgagggcgaggggtgctctgctgatttggt 196  Q
    |||| ||||| | |||| || |||||||||||||| | |||||||||||| |||| || || |||||||| | ||||||||||||   |||| |||||||    
T  24995570 gcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtactgggggcgaggggtgtcttgctaatttggt 24995471  T
Q  197 tctaaagtctggtggaccgat 217  Q
     ||| |||||||||| |||||    
T  24995470 actatagtctggtgggccgat 24995450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 37986994 - 37986919
Alignment:
Q  137 tttgacttgatatggtgtt-ctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtgg 211  Q
    ||||||||||| |||| || || |||||||||| ||||||||||||| ||||| |||||||  || ||||||||||    
T  37986994 tttgacttgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttggtgttatagtctggtgg 37986919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 17720894 - 17720837
Alignment:
Q  83 tgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgtttg 140  Q
    |||||||||||  ||||||||||||| ||||||||| || |||||||| || ||||||    
T  17720894 tgggccgattacttttgctttgagatcgagagttggcgtatagctgcattcttgtttg 17720837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 56 - 217
Target Start/End: Complemental strand, 23328565 - 23328405
Alignment:
Q  56 gtcttacatattgtgtgttg-tgtccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtgt 154  Q
    ||||||||||||||||| || |||||||||||||| || |  |||||| ||||| | |||||||||||||||||||||  ||||||||||||||||||||    
T  23328565 gtcttacatattgtgtgctggtgtccgatgggccggtttt--ttgcttcgagatcgggagttggtgtctagctgcaattttgtttgacttgatatggtgt 23328468  T
Q  155 tctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
    ||| |||||||||| ||||||||||||| ||| ||||||||||||||||| ||||||||||||    
T  23328467 tctctggtgtaccgggggcgaggggtgccctgttgatttggttctaaagtttggtggaccgat 23328405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 56 - 217
Target Start/End: Complemental strand, 40023789 - 40023627
Alignment:
Q  56 gtcttacatattgtgtgttg-tgtccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatg-tttgacttgatatggtg 153  Q
    |||||||||||||||| ||| |||||| ||| ||| |||| ||||||| ||||| |  |||||||||||||||||||||||| |||||||||||||||||    
T  40023789 gtcttacatattgtgtattggtgtccggtggaccggttatttttgcttcgagatcggaagttggtgtctagctgcaatcatgttttgacttgatatggtg 40023690  T
Q  154 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
    |||| | |||||||| |||||| |||||| |||||||||| ||| |||||||||||||||||||    
T  40023689 ttctctagtgtaccgggggcga-gggtgccctgctgattttgttttaaagtctggtggaccgat 40023627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 2392660 - 2392561
Alignment:
Q  120 gtctagctgcaatcat-gtttgacttgatatggtgtt-ctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
    |||||||||||||| | |||||||||| | |||| || || |||||||||| ||||||||||||| ||||| ||||||| ||| || |||||||||||||    
T  2392660 gtctagctgcaatctttgtttgacttggtttggttttactctggtgtaccgggggcgaggggtgccctgctaatttggtactatagcctggtggaccgat 2392561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 2394407 - 2394308
Alignment:
Q  120 gtctagctgcaatcat-gtttgacttgatatggtgtt-ctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
    |||||||||||||| | |||||||||| | |||| || || |||||||||| ||||||||||||| ||||| ||||||| ||| || |||||||||||||    
T  2394407 gtctagctgcaatctttgtttgacttggtttggttttactctggtgtaccgggggcgaggggtgccctgctaatttggtactatagcctggtggaccgat 2394308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 207
Target Start/End: Original strand, 25647557 - 25647700
Alignment:
Q  66 ttgtgtgttg-tgtccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtg-ttctatggtg 163  Q
    |||||||||| | |||||||||||| |||  ||||||| ||||  | |||| ||||||||||||||||  |||||| | |||| ||||| |||| |||||    
T  25647557 ttgtgtgttggtttccgatgggccggttacttttgcttcgagaacgggagtcggtgtctagctgcaattctgtttggcgtgatttggtgtttctctggtg 25647656  T
Q  164 taccgagggcgaggggtgctctgctgatttggttctaaagtctg 207  Q
    ||||| | | || |||||| || |||||||||| ||||||||||    
T  25647657 taccgggagtgaagggtgcccttctgatttggtcctaaagtctg 25647700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 217
Target Start/End: Complemental strand, 34475975 - 34475809
Alignment:
Q  54 ttgtcttacatattgtgtgttg-tgtccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcat-gtttgacttgatatgg 151  Q
    ||||||||||||| ||||| || | | |||||||||||||   || |||| ||||| | |||| || |||||||||||||  | |||||||||| | ||     
T  34475975 ttgtcttacatatcgtgtgctggttttcgatgggccgattcatttggcttcgagatcgggagtcggggtctagctgcaatttttgtttgacttggtttga 34475876  T
Q  152 tgtt-ctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
    | || || |||||||||| ||||||||||||| ||||| ||||| ||||| |||||||||| |||||    
T  34475875 tttttctctggtgtaccgggggcgaggggtgccctgctaatttgtttctatagtctggtgggccgat 34475809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 14193900 - 14193966
Alignment:
Q  151 gtgttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
    ||||||| |||||||||| | | ||||||||| || |||||||||| ||||||||||| ||||||||    
T  14193900 gtgttctttggtgtaccgggagtgaggggtgcccttctgatttggtcctaaagtctggcggaccgat 14193966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 45398776 - 45398822
Alignment:
Q  171 ggcgaggggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
    |||||||||||| |||||||||||| | |||||||||||||||||||    
T  45398776 ggcgaggggtgccctgctgatttggatttaaagtctggtggaccgat 45398822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 211
Target Start/End: Complemental strand, 4464125 - 4463997
Alignment:
Q  83 tgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtgtt-ctatggtgtaccgagggcgaggggtg 181  Q
    ||||||| |||  ||||||| ||||| | |||| ||||||||| ||||||| ||| || | |||| ||||||| || || ||||||||||| ||||||||    
T  4464125 tgggccggttacttttgcttcgagatcgggagtcggtgtctagttgcaatcttgtgtggcgtgatttggtgtttctctg-tgtaccgagggtgaggggtg 4464027  T
Q  182 ctctgctgatttggttctaaagtctggtgg 211  Q
    | || |||||||||   |||||||||||||    
T  4464026 cccttctgatttggccttaaagtctggtgg 4463997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 20611710 - 20611785
Alignment:
Q  120 gtctagctgcaatcat-gtttgacttgatatggtgtt-ctatggtgtaccgagggcgaggggtgctctgctgattt 193  Q
    |||||||||||||| | |||||||||||| |||| || || |||||||||| ||||||||||||| ||||| ||||    
T  20611710 gtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaattt 20611785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 217
Target Start/End: Original strand, 37123286 - 37123408
Alignment:
Q  96 tttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtg-ttctatggtgtaccgagggcgaggggtgctctgctgatttg 194  Q
    ||||||| ||||| | |||| ||||||||||||||||  |||||| | |||| ||||| |||| || |||||||| || ||||||||| ||  || ||||    
T  37123286 tttgcttcgagatcgggagtcggtgtctagctgcaattttgtttggcgtgatttggtgtttctctgatgtaccgaaggagaggggtgcccttatgttttg 37123385  T
Q  195 gttctaaagtctggtggaccgat 217  Q
    || ||||| | |||||| |||||    
T  37123386 gtcctaaattttggtgggccgat 37123408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 19176488 - 19176528
Alignment:
Q  177 gggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
    |||||| ||||| |||||||||||||||||||||| |||||    
T  19176488 gggtgccctgctaatttggttctaaagtctggtgggccgat 19176528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 45163824 - 45163868
Alignment:
Q  162 tgtaccgagggcgaggggtgctctgctgatttggttctaaagtct 206  Q
    ||||||||||||||||||||| ||||| ||||||| ||| |||||    
T  45163824 tgtaccgagggcgaggggtgccctgctaatttggtactatagtct 45163868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 56 - 211
Target Start/End: Original strand, 7874155 - 7874311
Alignment:
Q  56 gtcttacatattgtgtgttg-tgtccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtgt 154  Q
    |||||| |||||||||| || |||||| ||||||| || | ||||||| ||||| | |||||||||||||||||||||| || |||||||||||||||||    
T  7874155 gtcttaaatattgtgtgctggtgtccggtgggccggttttttttgcttcgagatcgggagttggtgtctagctgcaatcctgcttgacttgatatggtgt 7874254  T
Q  155 tctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtgg 211  Q
    ||| | ||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  7874255 tctctagtgtaccgagggcgatgggtgccctgctgatttggttctaaagtctggtgg 7874311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 55 - 217
Target Start/End: Complemental strand, 14106743 - 14106579
Alignment:
Q  55 tgtcttacatattgtgtgttg-tgtccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtg 153  Q
    |||||| | |||||||||||| | |||| ||||||| |||  ||||||| ||||  | |||| |||| |||||||||||| ||||||||||||| |||||    
T  14106743 tgtcttgcttattgtgtgttggtttccggtgggccggttacttttgcttcgagacagggagtcggtgactagctgcaatcctgtttgacttgatttggtg 14106644  T
Q  154 ttc-tatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
    ||| | |  |||||| |||||||||||||| ||||||||||||| |||||||||||||| |||||    
T  14106643 ttcctctcatgtacccagggcgaggggtgccctgctgatttggtcctaaagtctggtgggccgat 14106579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 217
Target Start/End: Original strand, 14405155 - 14405224
Alignment:
Q  147 tatggtgttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
    |||| |||||| |||||||||| |||||||||||||| || |||||||||||||||||||||||| |||||    
T  14405155 tatgttgttctctggtgtaccgggggcgaggggtgct-tgatgatttggttctaaagtctggtgggccgat 14405224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 39339040 - 39338920
Alignment:
Q  99 gctttgagattgagagttggtgtctagctgcaatcat-gtttgacttgatatggtgtt-ctatggtgtaccgagggcgaggggtgctctgctgatttggt 196  Q
    |||| ||||| | |||| || |||||||||||||  | |||||||||||| |||| || || |||||||||| ||||||||||||| ||||| |||||||    
T  39339040 gcttcgagatcgggagtcggggtctagctgcaatatttgtttgacttgatttggtttttctttggtgtaccgggggcgaggggtgccctgctaatttggt 39338941  T
Q  197 tctaaagtctggtggaccgat 217  Q
     ||| |||||||||| |||||    
T  39338940 actatagtctggtgggccgat 39338920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 217
Target Start/End: Original strand, 17105275 - 17105437
Alignment:
Q  57 tcttacatattgtgtgttg-tgtccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtg-t 154  Q
    |||||||||||||||| || | |||| |||| || |||  ||||||| |||||   |||| || |||||||||||| | |||||||||| ||  |||| |    
T  17105275 tcttacatattgtgtgctggtttccggtgggtcggttacttttgcttggagataaggagtcggcgtctagctgcaaccttgtttgacttaattaggtgtt 17105374  T
Q  155 tctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
    ||| |||||||||  ||| ||||||||| || |||||||||| || ||||||| ||| |||||    
T  17105375 tctttggtgtaccaggggtgaggggtgccctactgatttggtactgaagtctgatgggccgat 17105437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 387152 - 387193
Alignment:
Q  170 gggcgaggggtgctctgctgatttggttctaaagtctggtgg 211  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  387152 gggcgaggggtgccctgctaatttggtactaaagtctggtgg 387193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 41086981 - 41086849
Alignment:
Q  78 tccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtgttctatggtgtaccgagggcgagg 177  Q
    |||| ||| |||||||  ||||||||||||| | || | |||||| |||| ||||  |||||| | |||| ||||||||| |||||||||  ||| || |    
T  41086981 tccggtggaccgattacttttgctttgagatcgggaatcggtgtccagctacaattttgtttggcgtgatttggtgttctctggtgtaccaggggtga-g 41086883  T
Q  178 ggtgctctgctgatttggttctaaagtctggtgg 211  Q
    ||||| || ||||||||||  || ||||||||||    
T  41086882 ggtgcccttctgatttggtcatatagtctggtgg 41086849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 217
Target Start/End: Complemental strand, 7392251 - 7392086
Alignment:
Q  54 ttgtcttacatattgtgtgttg-tgtccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggt 152  Q
    ||||||||| | |||||||||| | || ||||| ||| |||  ||||||| ||||| | |||||||||||||||||||||| |||||| |||||| ||||    
T  7392251 ttgtcttactttttgtgtgttggtatctgatggaccggttacttttgcttcgagatcgggagttggtgtctagctgcaatcttgtttggcttgatttggt 7392152  T
Q  153 gtt-ctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
    ||| || || ||||||||||| ||||||||| || |||||||||| ||||||||||||||||||||    
T  7392151 gtttctctgatgtaccgagggtgaggggtgcccttctgatttggtcctaaagtctggtggaccgat 7392086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 203
Target Start/End: Original strand, 8297359 - 8297480
Alignment:
Q  83 tgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtg-ttctatggtgtaccgagggcgaggggtg 181  Q
    |||||||||||  ||||||| ||||| |||||||||||||||||||||||  |||||  |||||| ||||| |||| | |||||||||||| ||||||||    
T  8297359 tgggccgattacttttgcttcgagatcgagagttggtgtctagctgcaattttgttttgcttgatttggtgtttctctagtgtaccgagggtgaggggtg 8297458  T
Q  182 ctctgctgatttggttctaaag 203  Q
    | || |||||||||||||||||    
T  8297459 cccttctgatttggttctaaag 8297480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 83 - 217
Target Start/End: Complemental strand, 13954423 - 13954289
Alignment:
Q  83 tgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtg-ttctatggtgtaccgagggcgaggggtg 181  Q
    ||||||| |||  ||||||| |||||  ||||| ||||||||||||||||| | ||||||||||| | ||| |||| ||||||||||| || ||||||||    
T  13954423 tgggccggttacttttgcttcgagatcaagagtcggtgtctagctgcaatcttatttgacttgattttgtgtttctctggtgtaccgaaggtgaggggtg 13954324  T
Q  182 ctctgctgatttggttctaaagtctggtggaccgat 217  Q
    | || |||||||||| |||||||||||||| |||||    
T  13954323 c-cttctgatttggtcctaaagtctggtgggccgat 13954289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 99 - 213
Target Start/End: Original strand, 29087387 - 29087503
Alignment:
Q  99 gctttgagattgagagttggtgtctagctgcaatcat-gtttgacttgatatggtg-ttctatggtgtaccgagggcgaggggtgctctgctgatttggt 196  Q
    |||| ||||| | |||| || |||||||||||||| | |||||||||| | ||||  |||| || ||||||| |||||||||||||||||||  ||||||    
T  29087387 gcttcgagatcgggagtcggagtctagctgcaatctttgtttgacttgttttggtaattctctgttgtaccgggggcgaggggtgctctgctattttggt 29087486  T
Q  197 tctaaagtctggtggac 213  Q
    |||||||||||||||||    
T  29087487 tctaaagtctggtggac 29087503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 698304 - 698387
Alignment:
Q  135 tgtttgacttgatatggtgtt-ctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
    ||||||||||||| |||| || || |||||||||| ||||||||||||| ||||| ||||||| ||| ||||||||||||||||    
T  698304 tgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttggtgctatagtctggtggaccgat 698387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 34378025 - 34378124
Alignment:
Q  120 gtctagctgcaatcat-gtttgacttgatatgg-tgttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
    |||||||||||||| | |||||||||||| ||| | |||| |||||||||| |||| ||| |||| ||||| ||||||| |||||||||||||| |||||    
T  34378025 gtctagctgcaatctttgtttgacttgatttgggttttctctggtgtaccgggggcaaggagtgccctgctaatttggtactaaagtctggtgggccgat 34378124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 213
Target Start/End: Complemental strand, 14302607 - 14302489
Alignment:
Q  96 tttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtgtt-ctatggtgtaccgagggcgaggggtgctctgctgatttg 194  Q
    ||||||| ||||| | ||||  |||||||||||||| |  ||||| | |||| ||||||| || ||||||| |||||| ||||| ||| || ||| ||||    
T  14302607 tttgcttcgagatcgggagtccgtgtctagctgcaagctagtttggcgtgatctggtgtttctctggtgtatcgagggtgagggatgcccttctgttttg 14302508  T
Q  195 gttctaaagtctggtggac 213  Q
    || ||||||||||||||||    
T  14302507 gtcctaaagtctggtggac 14302489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 217
Target Start/End: Complemental strand, 33259043 - 33258937
Alignment:
Q  112 gagttggtgtctagctgcaatcatgtttgacttgatatggtgtt-ctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtg 210  Q
    |||| ||| ||||||| ||||| |||||| |  ||| ||||||| || ||||||||||| || ||||||||  || ||| |||||| |||||||||||||    
T  33259043 gagtcggtatctagctacaatcttgtttggcgcgatttggtgtttctctggtgtaccgaaggtgaggggtgtccttctgttttggtgctaaagtctggtg 33258944  T
Q  211 gaccgat 217  Q
    | |||||    
T  33258943 ggccgat 33258937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 60 - 217
Target Start/End: Original strand, 34389829 - 34389988
Alignment:
Q  60 tacatattgtgtgttg-tgtccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgttt-gacttgatatggtgttct 157  Q
    ||||||||||||| || |||| ||||||||  |||| ||||||| |||||    ||||||||||||| ||||||||||||| ||||||||||||||||||    
T  34389829 tacatattgtgtgctggtgtctgatgggccagttatttttgcttcgagatcagaagttggtgtctagttgcaatcatgttttgacttgatatggtgttct 34389928  T
Q  158 atggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
     |||||||| | ||| |||| |||| |||||||||||||| ||||||||||||| |||||    
T  34389929 ctggtgtactgggggtgaggagtgccctgctgatttggttttaaagtctggtgggccgat 34389988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 103 - 217
Target Start/End: Complemental strand, 41089919 - 41089803
Alignment:
Q  103 tgagattgagagttggtgtctagctgcaatcat-gtttgacttgatatggtgtt-ctatggtgtaccgagggcgaggggtgctctgctgatttggttcta 200  Q
    |||||| ||||||||| |||||||| ||||| | |||||||||||| |||| || || ||||||| || ||||||||||||||||||| ||||||| |||    
T  41089919 tgagatcgagagttggggtctagctacaatctttgtttgacttgatttggtttttctctggtgtatcgggggcgaggggtgctctgctaatttggtacta 41089820  T
Q  201 aagtctggtggaccgat 217  Q
    |||||||||||||||||    
T  41089819 aagtctggtggaccgat 41089803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 96 - 207
Target Start/End: Complemental strand, 35746003 - 35745892
Alignment:
Q  96 tttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtgttctatggtgtaccgagggcgaggggtgctctgctgatttgg 195  Q
    ||||||| ||||| |  |||||||| ||||| |||||| ||||||||||||||||||||||| || ||||||| ||||||||||||| || || |||| |    
T  35746003 tttgcttcgagatcggaagttggtgactagcagcaatcttgtttgacttgatatggtgttctctgatgtaccgggggcgaggggtgccctactaattttg 35745904  T
Q  196 ttctaaagtctg 207  Q
    ||||||||||||    
T  35745903 ttctaaagtctg 35745892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 25160778 - 25160842
Alignment:
Q  154 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatt 218  Q
    |||| |||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||    
T  25160778 ttctctggtgtaccgagggcgaggggtgccctgctaatttggttctatagtctggtggaccgatt 25160842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 6584873 - 6584935
Alignment:
Q  155 tctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
    ||||||||||||||  |||||||||||| |||||||||||||||||||||||||||| |||||    
T  6584873 tctatggtgtaccggaggcgaggggtgccctgctgatttggttctaaagtctggtgggccgat 6584935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 211
Target Start/End: Original strand, 3866979 - 3867136
Alignment:
Q  56 gtcttacatattgtgtgttgtgtccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcat-gtttgacttgatatggtgt 154  Q
    ||||||||||||||||  ||  | || |||| ||||||  ||||||| ||||| |||||| || |||||||| ||||| | ||||||||||||||||| |    
T  3866979 gtcttacatattgtgtcctggtttcggtgggtcgattacttttgcttcgagatcgagagtcggggtctagctacaatctttgtttgacttgatatggttt 3867078  T
Q  155 t-ctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtgg 211  Q
    | || ||||||||||||||||| |||||  ||||| ||||||| ||||| | ||||||    
T  3867079 ttctctggtgtaccgagggcgaagggtggcctgctaatttggtactaaaatatggtgg 3867136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 217
Target Start/End: Original strand, 16954539 - 16954679
Alignment:
Q  78 tccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggt-gttctatggtgtaccgagggcgag 176  Q
    ||||||||||||||||  |||||||  |||| |||||||||||||||||||||||| || ||| |  ||| ||||  |||| ||||||| |   || |||    
T  16954539 tccgatgggccgattacttttgcttccagatcgagagttggtgtctagctgcaatcttggttggcgcgatttggtctttctctggtgtatcagaggtgag 16954638  T
Q  177 gggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
    |||||| || |||||||||| |||||||||||| |||||||    
T  16954639 gggtgcccttctgatttggtcctaaagtctggttgaccgat 16954679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 217
Target Start/End: Original strand, 44755518 - 44755652
Alignment:
Q  83 tgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtgtt-ctatggtgtaccgagggcgaggggtg 181  Q
    |||||| ||||  ||||||||||| | | |||| ||||||||||||| ||  |||||||| |||| ||||||| || |||||||||| ||  ||||||||    
T  44755518 tgggcccattaattttgctttgaggtcgggagtcggtgtctagctgctattttgtttgacgtgatttggtgtttctctggtgtaccgtggt-gaggggtg 44755616  T
Q  182 ctctgctgatttggttctaaagtctggtggaccgat 217  Q
    | || |||||||||| |||||||||||||| |||||    
T  44755617 cccttctgatttggtcctaaagtctggtgggccgat 44755652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 59 - 210
Target Start/End: Original strand, 33434975 - 33435128
Alignment:
Q  59 ttacatattgtgtgttg-tgtccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcat-gtttgacttgatatggtgttc 156  Q
    ||||||||||||||||| | |||| |||||||||||  ||||||| ||||| |  |||  | |||||| || |||| | ||||  |||||| |||| |||    
T  33434975 ttacatattgtgtgttggtttccggtgggccgattacttttgcttcgagatcggtagtccgggtctagttgtaatctttgtttagcttgatttggttttc 33435074  T
Q  157 tatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtg 210  Q
    | |||||||||| ||||||||||||| ||| | ||||||| |||||||||||||    
T  33435075 tctggtgtaccgggggcgaggggtgccctgttaatttggtactaaagtctggtg 33435128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 209
Target Start/End: Complemental strand, 16829131 - 16828999
Alignment:
Q  78 tccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtg-ttctatggtgtaccgagggcgag 176  Q
    ||||||||| ||||||  |||||||  |||||||||||||||||||| |||||||| || ||| |  ||| ||||| |||| | ||||| |  ||| |||    
T  16829131 tccgatgggtcgattacttttgcttccagattgagagttggtgtctacctgcaatcttggttggcgcgatttggtgtttctctagtgtatcaggggtgag 16829032  T
Q  177 gggtgctctgctgatttggttctaaagtctggt 209  Q
    |||||| || |||||||||| ||||||||||||    
T  16829031 gggtgcccttctgatttggtcctaaagtctggt 16828999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 38306188 - 38306287
Alignment:
Q  120 gtctagctgcaatcat-gtttgacttgatatggtgtt-ctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
    |||||||||||||| | |||||||||||| |||| || || |||||||| | ||||||||||||| ||||| ||||||| ||| |||||||||| |||||    
T  38306188 gtctagctgcaatctttgtttgacttgatttggtttttctctggtgtacagggggcgaggggtgccctgctaatttggtactatagtctggtgggccgat 38306287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 217
Target Start/End: Complemental strand, 47326103 - 47325940
Alignment:
Q  57 tcttacatattgtgtgttg-tgtccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcat-gtttgacttgatatggtgt 154  Q
    |||||||||||||||| || | | |||||||||| ||   || |||| ||||| | |||| || ||||||| |||||| | |||| ||||||| |||| |    
T  47326103 tcttacatattgtgtgctggttttcgatgggccggttcatttggcttcgagatcgggagtcggggtctagcagcaatctttgtttaacttgatttggttt 47326004  T
Q  155 t-ctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
    | || |||||||||| |||||||||||||  |||| ||||||| ||| |||||||||| |||||    
T  47326003 ttctctggtgtaccgggggcgaggggtgccttgctaatttggtactatagtctggtgggccgat 47325940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 211
Target Start/End: Complemental strand, 3419831 - 3419717
Alignment:
Q  99 gctttgagattgagagttggtgtctagctgcaatcat-gtttgacttgatatggtgtt-ctatggtgtaccgagggcgaggggtgctctgctgatttggt 196  Q
    |||| ||||| | |||| || |||||||||||||| | |||||||||||| |||| || || |||| ||||| ||||||||||||| ||| | |||||||    
T  3419831 gcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtataccgggggcgaggggtgccctgttaatttggt 3419732  T
Q  197 tctaaagtctggtgg 211  Q
     ||||||| ||||||    
T  3419731 actaaagtgtggtgg 3419717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 6716909 - 6716815
Alignment:
Q  100 ctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtg-ttctatggtgtaccgagggcgaggggtgctctgctgattt 193  Q
    ||||||||| | |||| ||||||||||||||||| | |||| |||||| || || |||| |||||||||||| | ||||||||| || |||||||    
T  6716909 ctttgagatcgggagtcggtgtctagctgcaatcttatttggcttgatttgatgtttctctggtgtaccgagagtgaggggtgcccttctgattt 6716815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 217
Target Start/End: Original strand, 8745078 - 8745179
Alignment:
Q  117 ggtgtctagctgcaatcatgtttgacttgatatggtg-ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccg 215  Q
    ||||||||||||||||  ||||||   |||| ||||| |||| ||||| |||||||| ||||||||  || |||||||||| ||||| |||||||| |||    
T  8745078 ggtgtctagctgcaatgttgtttggtgtgatctggtgtttctctggtgcaccgagggtgaggggtggccttctgatttggtcctaaattctggtgggccg 8745177  T
Q  216 at 217  Q
    ||    
T  8745178 at 8745179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 42533447 - 42533313
Alignment:
Q  78 tccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtgtt-ctatggtgtaccgagggcgag 176  Q
    |||||||||||| |||  ||||||| ||||| | ||||  ||||| ||||||| || | |||| |  ||| ||||||| || ||||| | || ||| |||    
T  42533447 tccgatgggccggttacttttgcttcgagatcgggagtctgtgtccagctgcattcttatttggcgcgatgtggtgtttctctggtgcatcgggggtgag 42533348  T
Q  177 gggtgctctgctgatttggttctaaagtctggtgg 211  Q
    |||||| || |||||||||| ||||||||||||||    
T  42533347 gggtgccctcctgatttggtcctaaagtctggtgg 42533313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 15132712 - 15132585
Alignment:
Q  83 tgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtgttctatggtgtaccgagggcgaggggtgc 182  Q
    ||||||| |||  ||||||| ||||| | |||| |||| |||||||||||| ||||||||||||||||||||||| || ||||| | |||||||||||||    
T  15132712 tgggccggttacttttgcttcgagatcgggagtcggtgactagctgcaatcctgtttgacttgatatggtgttctctgatgtactgggggcgaggggtgc 15132613  T
Q  183 tctgctgatttggttctaaagtctggtg 210  Q
     ||| |||||| ||||||||||||||||    
T  15132612 cctgttgattttgttctaaagtctggtg 15132585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 83 - 217
Target Start/End: Complemental strand, 16510492 - 16510356
Alignment:
Q  83 tgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcat-gtttgacttgatatggtgtt-ctatggtgtaccgagggcgaggggt 180  Q
    ||||||| |||  ||||||| ||||| | |||| || |||||||||||||| | ||||||||||||||||| || || ||||||||||||||| ||||||    
T  16510492 tgggccggttacttttgcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatatggtttttctctggtgtaccgagggcaaggggt 16510393  T
Q  181 gctctgctgatttggttctaaagtctggtggaccgat 217  Q
    || ||||| ||||||||||||||||| |||| |||||    
T  16510392 gccctgctaatttggttctaaagtctagtgggccgat 16510356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 217
Target Start/End: Complemental strand, 3880760 - 3880638
Alignment:
Q  96 tttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtg-ttctatggtgtaccgagggcgaggggtgctctgctgatttg 194  Q
    ||||||||||||| | |||| ||||||||||||| ||| |||||| | |||| ||||| |||| |||| ||||||||| ||| ||||| || ||||||||    
T  3880760 tttgctttgagatcgggagtcggtgtctagctgctatcttgtttggcatgatttggtgtttctctggtttaccgagggtgagaggtgcccttctgatttg 3880661  T
Q  195 gttctaaagtctggtggaccgat 217  Q
    || ||||||| |||||| |||||    
T  3880660 gtcctaaagtttggtgggccgat 3880638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 217
Target Start/End: Complemental strand, 32935516 - 32935394
Alignment:
Q  96 tttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtg-ttctatggtgtaccgagggcgaggggtgctctgctgatttg 194  Q
    |||||||||||||    ||||||||||||||||||||| | |||| |||| ||||||| ||||||| || | || ||| ||||||| | || ||||||||    
T  32935516 tttgctttgagatcagaagttggtgtctagctgcaatcttctttggcttgttatggtgtttctatgatggatcgggggtgaggggttcccttctgatttg 32935417  T
Q  195 gttctaaagtctggtggaccgat 217  Q
    || || ||||||||||| |||||    
T  32935416 gtcctgaagtctggtgggccgat 32935394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 196
Target Start/End: Complemental strand, 20701998 - 20701879
Alignment:
Q  78 tccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatgg-tgttctatggtgtaccgagggcgag 176  Q
    |||||||||||| |||  ||||||||||||| | || | |||||||||||||||   |||||| | |||| ||| | |||| |||||||||| ||| |||    
T  20701998 tccgatgggccggttacttttgctttgagatcgggattcggtgtctagctgcaaatttgtttggcgtgatttggtttttctctggtgtaccgggggtgag 20701899  T
Q  177 gggtgctctgctgatttggt 196  Q
    |||||| || ||||||||||    
T  20701898 gggtgcccttctgatttggt 20701879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 66 - 208
Target Start/End: Original strand, 36580 - 36724
Alignment:
Q  66 ttgtgtgttg-tgtccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtgtt-ctatggtg 163  Q
    |||||||||| | |||| |||||||||||  |||| || |||||   |||| ||||||||||||||||  |||||| | |||| ||||||| || |||||    
T  36580 ttgtgtgttggtttccggtgggccgattaattttgattcgagatcaggagtcggtgtctagctgcaattttgtttggcgtgatttggtgtttctctggtg 36679  T
Q  164 taccgagggcgaggggtgctctgctgatttggttctaaagtctgg 208  Q
    ||||||| | ||||||||| || |||||||||| |||||||||||    
T  36680 taccgagagtgaggggtgcccttctgatttggtcctaaagtctgg 36724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 1236 - 1148
Alignment:
Q  54 ttgtcttacatattgtgtgttgtgtccga-tgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgtttga 141  Q
    ||||||||||||||||||| ||  | | | |||||||||||  ||||||| ||||||| |||||||||||||||||||||| |||||||    
T  1236 ttgtcttacatattgtgtgctggattctagtgggccgattacttttgcttcgagattgggagttggtgtctagctgcaatcttgtttga 1148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 217
Target Start/End: Original strand, 19269 - 19409
Alignment:
Q  79 ccgatgggccgattatatttgctttgagattgagagttggtgtctagctgcaatcatgttt-gacttgatatggtgtt-ctatggtgtaccgagggcgag 176  Q
    |||||||| || |||  ||||||| ||||| | |||| |||||||||||||| || ||||| | ||| || || |||| || |||| |||| | || |||    
T  19269 ccgatgggtcggttaattttgcttcgagatcgggagtcggtgtctagctgcattcttgttttggcttaatttgatgtttctctggtataccaaaggtgag 19368  T
Q  177 gggtgctctgctgatttggttctaaagtctggtggaccgat 217  Q
    |||||| || |||||||||| |||||||||||||| |||||    
T  19369 gggtgcccttctgatttggtcctaaagtctggtgggccgat 19409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 130
Target Start/End: Original strand, 6470 - 6504
Alignment:
Q  96 tttgctttgagattgagagttggtgtctagctgca 130  Q
    ||||||||||||||| |||||||||||||||||||    
T  6470 tttgctttgagattgggagttggtgtctagctgca 6504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 217
Target Start/End: Original strand, 58031 - 58153
Alignment:
Q  96 tttgctttgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtg-ttctatggtgtaccgagggcgaggggtgctctgctgatttg 194  Q
    ||||||| ||||| | |||| | ||||||||||||||| |||||| | |||| ||||| |||| ||||||||| |||| |   ||||| || | ||||||    
T  58031 tttgcttcgagatcgggagtcgttgtctagctgcaatcttgtttggcgtgatttggtgtttctctggtgtacctagggtgtatggtgcccttcagatttg 58130  T
Q  195 gttctaaagtctggtggaccgat 217  Q
    || ||||||| |||||| |||||    
T  58131 gtcctaaagtttggtgggccgat 58153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University