View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10641_low_39 (Length: 234)
Name: NF10641_low_39
Description: NF10641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10641_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 28496946 - 28497164
Alignment:
| Q |
1 |
actatatagtaataaggccaagaaagtgaaagagaagaagnnnnnnnccactaactttcaaaggtttttattagtttcagtcagtacaaggaagaaaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28496946 |
actatatagtaataaggccaagaaagtgaaagagaagaagaaaaaaaccactaactttcaaaggtttttattagtttcagtcagtacaaggaagaaaaca |
28497045 |
T |
|
| Q |
101 |
atggtttaagattagcaaaagccaagaaagtgaacataaattcttttggatggttctttaaagagagagttgttggctacttggctgagtgtatcgttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28497046 |
atggtttaagattagcaaaagccaagaaagtgaacataaattcttttggatggttctttaaagagagagttgttggctacttggctgagtgtatcgttca |
28497145 |
T |
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| Q |
201 |
gccaaaagacaagaaaaat |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
28497146 |
gccaaaagacaagaaaaat |
28497164 |
T |
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