View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10641_low_4 (Length: 422)
Name: NF10641_low_4
Description: NF10641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10641_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 90 - 406
Target Start/End: Complemental strand, 49928703 - 49928383
Alignment:
| Q |
90 |
tgacaaaactaacctcagaaacaagtttgaaggcaatttcagcttttggatgtttgttcttatctggatgaagttgtaaggctacagnnnnnnnn----c |
185 |
Q |
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| T |
49928703 |
tgacaaaactaacctcagaaacaagtttgaaggcaatttcagcttttggatgtttgttcttatctggatgaagttgtaaggctagagaaaaaaaaaaaac |
49928604 |
T |
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| Q |
186 |
caacaaaattaatataaaaaactcatcataattcatgatatagagataatgcagatttaatttaacataatagtaaaaccagttaaacctaccaagttta |
285 |
Q |
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| T |
49928603 |
caacaaaattaatataaaaaactcatcataattcatgatatagagataatgcagatttaatttaacataatagtaaaaccagttaaacctaccaagttta |
49928504 |
T |
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| Q |
286 |
tggtatcttttgcgaatggtatttactcctgcattttcttctacctatatgaagatatatgcatgaatgagaaagaaccaaaagaaaaaagctacctagt |
385 |
Q |
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| T |
49928503 |
tggtatcttttgcgtatggtatttactcctgcattttcttctacctatatgaagatatatgtatgaatgagaaagaaccaaaagaaaaaagctacctagt |
49928404 |
T |
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| Q |
386 |
ttgcattgtaccaaaacaaga |
406 |
Q |
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| T |
49928403 |
ttgcattgtaccaaaacaaga |
49928383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 49928781 - 49928740
Alignment:
| Q |
9 |
agcatagggaaatgagattttgtaccattgttacaatacttg |
50 |
Q |
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| T |
49928781 |
agcagagggaaatgagattttgtaccattgttacaatacttg |
49928740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 95 - 172
Target Start/End: Original strand, 13696049 - 13696126
Alignment:
| Q |
95 |
aaactaacctcagaaacaagtttgaaggcaatttcagcttttggatgtttgttcttatctggatgaagttgtaaggct |
172 |
Q |
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| T |
13696049 |
aaactaacctcagagacaagcttgaatgcaatttcagccttgggatgtttattcttatctggatgaagttgcaaggct |
13696126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 13696208 - 13696271
Alignment:
| Q |
270 |
aaacctaccaagtttatggtatcttttgcgaatggtatttactcctgcattttcttctacctat |
333 |
Q |
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| T |
13696208 |
aaacataccaagtttatgatatttcttccgaatggtatttacacctgcattttcttccacctat |
13696271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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