View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10641_low_41 (Length: 227)
Name: NF10641_low_41
Description: NF10641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10641_low_41 |
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| [»] chr1 (7 HSPs) |
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| [»] scaffold0312 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 960895 - 960687
Alignment:
| Q |
16 |
aggcacacaaacttgtaaccctaaaccataatttaacatggtacacatattgcaggttttataatttaaaatatttaaagtagttgctatatagtgctca |
115 |
Q |
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| T |
960895 |
aggcacacaaacttgtaaccctaaaccataatttaacatggtacacataatgcaggttttataatttaaaatatttaaagtagttgctatatagtgctca |
960796 |
T |
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| Q |
116 |
ttattcaaggatacaacaactattgatgaaagaggttctattttcacttggaaacccaaacaacatgatcctgtgggaggatgtgacaaataggaacagt |
215 |
Q |
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| T |
960795 |
ttattcaaggata---caactattgatgaaagaggttatattttcacttggaaacccaaacaacatgatcctgtgggaggatgtgacaaataggaacagt |
960699 |
T |
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| Q |
216 |
ccctggttgaac |
227 |
Q |
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|||||||||||| |
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| T |
960698 |
ccctggttgaac |
960687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 942929 - 942726
Alignment:
| Q |
20 |
acacaaacttgtaaccctaaaccataatttaacatggtacacatattgcaggttttataatttaaaatatttaaagtagttgctatatagtgctcattat |
119 |
Q |
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| T |
942929 |
acacaaacttgtaagcataaaacataatttaacatggtacacatgta-catgttttataatttaaaatatttaaagtagttgctatatagtgctcattat |
942831 |
T |
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| Q |
120 |
tcaaggatacaacaactattgatgaaagaggttctattttcacttggaaacccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccct |
219 |
Q |
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| T |
942830 |
tcaaggatacaac---tattgatgaaagaggttatattttcacttggaaacccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccct |
942734 |
T |
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| Q |
220 |
ggttgaac |
227 |
Q |
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|||||||| |
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| T |
942733 |
ggttgaac |
942726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 87 - 227
Target Start/End: Complemental strand, 949850 - 949715
Alignment:
| Q |
87 |
tatttaaagtagttgctatatagtgctcattattcaaggatacaacaactattgatgaaagaggttctattttcacttggaaacccaaacaacatgatcc |
186 |
Q |
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| T |
949850 |
tatttaaagtagttgctata--gcactcattattcaaggatacaac---tattgatgaaagaggttctattttcacttggaaacccaaacaacatgatcc |
949756 |
T |
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| Q |
187 |
tgtgggaggatgtgacaaataggaacagtccctggttgaac |
227 |
Q |
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| T |
949755 |
tgtgggaggatgtgacaaataggaacagtccctggttgaac |
949715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 972060 - 971996
Alignment:
| Q |
163 |
ttggaaacccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaac |
227 |
Q |
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| T |
972060 |
ttggaaacccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaac |
971996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 936872 - 936806
Alignment:
| Q |
161 |
acttggaaacccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaac |
227 |
Q |
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| T |
936872 |
acttggaaacccaaacaacatgatcctgaggaaggaagtgacaaactggaacagttccaggttgaac |
936806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 419496 - 419552
Alignment:
| Q |
171 |
ccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaac |
227 |
Q |
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| T |
419496 |
ccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaac |
419552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 975665 - 975609
Alignment:
| Q |
171 |
ccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaac |
227 |
Q |
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| T |
975665 |
ccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaac |
975609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 11075 - 11019
Alignment:
| Q |
171 |
ccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaac |
227 |
Q |
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| T |
11075 |
ccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaac |
11019 |
T |
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