View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10641_low_42 (Length: 227)
Name: NF10641_low_42
Description: NF10641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10641_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 208
Target Start/End: Original strand, 52770849 - 52771050
Alignment:
| Q |
7 |
gagaagcagagataaaaaggcaagcacggttattacagcaagaatcaagaaagtaggaccagtccctaaagcttcagcaacagaaagaaatgtctgagac |
106 |
Q |
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| T |
52770849 |
gagaagcacaaataaaaaggcaagcacggttattacagcaagaatcaagaaagtaggaccagtccctaaagcttcagcaacagaaagaaatgtctgagac |
52770948 |
T |
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| Q |
107 |
acaatgagattggaaacccaacacacagtagctgacataccaccacaaattcctctatattctttaggatatatctctgagttcattgcccacggcactg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52770949 |
acaatgagattggaaacccaacacacagtagctgacataccaccacaaattcctctatattctttaggatatatctctgagttcattgcccacggcactg |
52771048 |
T |
|
| Q |
207 |
gt |
208 |
Q |
| |
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|| |
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| T |
52771049 |
gt |
52771050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 43 - 161
Target Start/End: Original strand, 52766921 - 52767039
Alignment:
| Q |
43 |
agcaagaatcaagaaagtaggaccagtccctaaagcttcagcaacagaaagaaatgtctgagacacaatgagattggaaacccaacacacagtagctgac |
142 |
Q |
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|||||||| |||||| ||||||||||||||| |||||| |||| |||||||||| ||||| |||||| | ||| |||| |||| ||||||||||||| |
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| T |
52766921 |
agcaagaagcaagaatgtaggaccagtccctgcagcttctgcaatggaaagaaatgactgagccacaatcaaatttgaaatccaattcacagtagctgac |
52767020 |
T |
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| Q |
143 |
ataccaccacaaattcctc |
161 |
Q |
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|| || ||||| ||||||| |
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| T |
52767021 |
atccctccacacattcctc |
52767039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 189
Target Start/End: Complemental strand, 392926 - 392778
Alignment:
| Q |
41 |
acagcaagaatcaagaaagtaggaccagtccctaaagcttcagcaacagaaagaaatgtctgagacacaatgagattggaaacccaacacacagtagctg |
140 |
Q |
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||||||| |||||||||||| | | || |||| | ||| ||||||| |||||||| ||| ||||| || | ||| |||| ||||||||| || |||| |
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| T |
392926 |
acagcaataatcaagaaagttgaagcaatcccgatagcgtcagcaatcgaaagaaagctctcggacacgatcaaatttgaaatccaacacacggtcgctg |
392827 |
T |
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| Q |
141 |
acataccaccacaaattcctctatattctttaggatatatctctgagtt |
189 |
Q |
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||| || ||||| || |||| |||||||| |||||||||||||||||| |
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| T |
392826 |
ccatgcccccacatatacctcgatattcttcaggatatatctctgagtt |
392778 |
T |
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