View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10641_low_5 (Length: 417)
Name: NF10641_low_5
Description: NF10641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10641_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 8 - 403
Target Start/End: Original strand, 45770605 - 45771000
Alignment:
| Q |
8 |
aagcagagaaaaggacttgatcacaaagaatgccccatacgcagccaaaaacaaaataagtggttaccaacttgctcttcactctcctattacactgtga |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45770605 |
aagcaaagaaaaggacttgatcacaaagaatgccccatacgcagccaaaaacaaaataagtggttaccaacttgctcttcactctcctattacactgtga |
45770704 |
T |
|
| Q |
108 |
cattacattcactaatagcaaccctacctactagtacttggggccattacctcaaacgtggttgatgatgggttggcaaaggtccacaaagggccatttt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45770705 |
cattacattcactaatagcaaccctacctactagtacttggggccattacctcaaacgtggttgatgatgggttggcaaaggtccacaaagggccatttt |
45770804 |
T |
|
| Q |
208 |
agtttgcctcatactaaggtaactatcataactctttgtctaggggtggatctccctcacaagactatcacatttccttttatgaataaaatatcaaaat |
307 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45770805 |
agtttgcctcatacaaaggtaactatcataactctttgtctaggggtggatctccctcacaagactatcacatttccttttatgaataaaatatcaaaat |
45770904 |
T |
|
| Q |
308 |
aatatattcttatttgctaattcatttatggtcaaatttgttgatacatgatttgctctcatctatccaaatatgtggggctttcttgttctaatt |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45770905 |
aatatattcttatttgctaattcatttatggtcaaatttgttgatacatgatttactctcatctatccaaatatgtggggctttcttgttctaatt |
45771000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University