View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10641_low_7 (Length: 394)

Name: NF10641_low_7
Description: NF10641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10641_low_7
NF10641_low_7
[»] chr5 (7 HSPs)
chr5 (19-386)||(38866433-38866787)
chr5 (30-170)||(29169637-29169776)
chr5 (69-143)||(1759157-1759231)
chr5 (115-170)||(38157724-38157782)
chr5 (239-289)||(38749462-38749513)
chr5 (296-341)||(38749554-38749598)
chr5 (296-341)||(41558645-41558689)
[»] chr4 (4 HSPs)
chr4 (30-148)||(18988033-18988148)
chr4 (69-148)||(27463358-27463433)
chr4 (296-341)||(18513232-18513276)
chr4 (69-103)||(27483729-27483763)
[»] chr6 (1 HSPs)
chr6 (296-341)||(9024167-9024211)
[»] chr3 (1 HSPs)
chr3 (293-341)||(7948983-7949030)


Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 386
Target Start/End: Complemental strand, 38866787 - 38866433
Alignment:
Q  19 tggttgacactagaaccaatttatatttgtacatcccttacannnnnnnngtaaataagttggtatgtactatttcaacattctttgaactcactcaatg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38866787 tggttgacactagaaccaatttatatttgtacatcccttacattttttt-gtaaataagttggtatgtactatttcaacattctttgaactcactcaatg 38866689  T
Q  119 aatgaaagtatttttataccatctatcagtataataatctgtctaaaatagtaatactggatcgattcaatgccttgtgaattatgtattactatagctg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38866688 aatgaaagtatttttataccatctatcagtataataatctgtctaaaatagtaatactggattgattcaatgccttgtgaattatgtattactatagctg 38866589  T
Q  219 tgattcacagctatagaagagttatatgtttttacaatattcttactttggaagaatctatgaaacacatatactcatgtccgacacaacactgacacat 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||           |||||||    
T  38866588 tgattcacagctatagaagagttatatgtttttacaatattcttactttggaagaatctatgaaacacatatactcat-tcc-----------gacacat 38866501  T
Q  319 ataaattacattgaattatgtcannnnnnncaaaatattatcggtgtcgacgtgtccacgtctctgct 386  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||| ||||    
T  38866500 ataaattacattgaattatgtcatttttttcaaaatattatcggtgtcgacgtgtccacgtctgtgct 38866433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 30 - 170
Target Start/End: Original strand, 29169637 - 29169776
Alignment:
Q  30 agaaccaatttatatttgtacatcccttacannnnnnnngtaaataagttggtatgtactatttcaacattctttgaactcactcaatgaatgaaagtat 129  Q
    |||||||||||||||||||||||||||||||        |||||||| ||| |||||||||| ||||||||||||||    ||| |||||||||||||||    
T  29169637 agaaccaatttatatttgtacatcccttacatttgttttgtaaataacttgatatgtactatctcaacattctttga----acttaatgaatgaaagtat 29169732  T
Q  130 ttttataccatc---tatcagtataataatctgtctaaaatagt 170  Q
    ||||||| ||||   ||||||| ||||||||||||| |||||||    
T  29169733 ttttataacatctattatcagtttaataatctgtctgaaatagt 29169776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 69 - 143
Target Start/End: Original strand, 1759157 - 1759231
Alignment:
Q  69 gtaaataagttggtatgtactatttcaacattctttgaactcactcaatgaatgaaagtatttttataccatcta 143  Q
    ||||||||||||||||||||||| ||||||||||||||||| | | ||||||| |||||||||||||||||||||    
T  1759157 gtaaataagttggtatgtactatctcaacattctttgaacttaatgaatgaatcaaagtatttttataccatcta 1759231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 170
Target Start/End: Original strand, 38157724 - 38157782
Alignment:
Q  115 aatgaatgaaagtatttttataccatct---atcagtataataatctgtctaaaatagt 170  Q
    ||||||||||||||||||||||||||||   |||||| |||||||||||||||||||||    
T  38157724 aatgaatgaaagtatttttataccatctatgatcagtttaataatctgtctaaaatagt 38157782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 38749462 - 38749513
Alignment:
Q  239 gttatatgtttttacaatattc-ttactttggaagaatctatgaaacacata 289  Q
    ||||||||||||||||||| || |||||||||| ||||||||||||||||||    
T  38749462 gttatatgtttttacaataatccttactttggaggaatctatgaaacacata 38749513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 38749554 - 38749598
Alignment:
Q  296 tgtccgacacaacactgacacatataaattacattgaattatgtca 341  Q
    |||||||||||||||  |||||||||| ||||||||||||||||||    
T  38749554 tgtccgacacaacaccaacacatataa-ttacattgaattatgtca 38749598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 41558645 - 41558689
Alignment:
Q  296 tgtccgacacaacactgacacatataaattacattgaattatgtca 341  Q
    |||||||||| |||||||||||| ||| ||||||||||||||||||    
T  41558645 tgtccgacacgacactgacacatttaa-ttacattgaattatgtca 41558689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 148
Target Start/End: Original strand, 18988033 - 18988148
Alignment:
Q  30 agaaccaatttatatttgtacatcccttacannnnnnnngtaaataagttggtatgtactatttcaacattctttgaactcactcaatgaatgaaagtat 129  Q
    ||||||||| |||||||||| ||||||||||        |||||||||||||||| |||||| ||||||||||||||    ||| |||||||||||||||    
T  18988033 agaaccaatctatatttgtagatcccttacatttgttttgtaaataagttggtatatactatctcaacattctttga----acttaatgaatgaaagtat 18988128  T
Q  130 ttttata-ccatctatcagt 148  Q
    ||||||| ||||||||||||    
T  18988129 ttttatacccatctatcagt 18988148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 27463358 - 27463433
Alignment:
Q  69 gtaaataagttggtatgtactatttcaacattctttgaactcactcaatgaatgaaagtatttttataccatctatcagt 148  Q
    ||||||||||||||||||||||| ||||||||||||||    ||  ||||||||||| ||||||||||||||||||||||    
T  27463358 gtaaataagttggtatgtactatctcaacattctttga----acataatgaatgaaattatttttataccatctatcagt 27463433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 18513232 - 18513276
Alignment:
Q  296 tgtccgacacaacactgacacatataaattacattgaattatgtca 341  Q
    |||||||||||||||||||||||||  |||||||||||||||||||    
T  18513232 tgtccgacacaacactgacacatat-gattacattgaattatgtca 18513276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 27483729 - 27483763
Alignment:
Q  69 gtaaataagttggtatgtactatttcaacattctt 103  Q
    ||||||||||||||||||||||| |||||||||||    
T  27483729 gtaaataagttggtatgtactatctcaacattctt 27483763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 9024167 - 9024211
Alignment:
Q  296 tgtccgacacaacactgacacatataaattacattgaattatgtca 341  Q
    |||||||||| ||||||||||||||  |||||||||||||||||||    
T  9024167 tgtccgacacgacactgacacatat-gattacattgaattatgtca 9024211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 341
Target Start/End: Complemental strand, 7949030 - 7948983
Alignment:
Q  293 tcatgtccgacacaacactgacacatataaattacattgaattatgtca 341  Q
    ||||||||||||| || |||||||||| || ||||||||||||||||||    
T  7949030 tcatgtccgacacgactctgacacatacaa-ttacattgaattatgtca 7948983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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