View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10641_low_8 (Length: 393)
Name: NF10641_low_8
Description: NF10641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10641_low_8 |
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| [»] scaffold0604 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 15 - 379
Target Start/End: Complemental strand, 20425057 - 20424695
Alignment:
| Q |
15 |
gacattggaagattctaaaccacaccaatatggtggatcttgaataatagtccaagtctgttacgacatcactccaaggaccaacaatgtgcatatcagg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
20425057 |
gacattggaagattctaaaccacaccaatatagtggatcttgaata-tagtccaagtctgttacgacatcactccaaggaccaacgatgcgcatatcagg |
20424959 |
T |
|
| Q |
115 |
aaatttgatactatgttggtcttctctttgtttctcaatcagctcagtggtctgaacatcttcaatctgtgttgattgcacacgagctgctccaacagag |
214 |
Q |
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|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
20424958 |
aaatttgctactatgttggtcttctctttgtttctcaatcagctcagtggtctgaacatcttcaatctgtgttgattgcaaacgagctgttccaacagag |
20424859 |
T |
|
| Q |
215 |
atgctagtagacaacctcttcctcaaagttaataacatttcttatcagtgcactagtttctacctccttggaccttattatatcactaataataggatct |
314 |
Q |
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|
||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20424858 |
atgctagcagacaa-ctcttcctcaaagttaataatatttcttatcagtgcactagtttctacctccttggaccttattatatcactaataataggatct |
20424760 |
T |
|
| Q |
315 |
tcatctgccacacctttacgacaatctttcactacatactttttagggtcatgtttgaattgttt |
379 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20424759 |
tcatctgccacacctttacgacattctttcactacatactttttagggtcatgtttgaattgttt |
20424695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 43805364 - 43805448
Alignment:
| Q |
31 |
aaaccacaccaatatggtggatcttgaataatagtccaagtctgttacgacatcactccaaggaccaacaatgtgcatatcaggaa |
116 |
Q |
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|||||| ||||| | || |||| ||||||| || ||||||||||| || | ||||||||||||||||||||| |||||||||||| |
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| T |
43805364 |
aaaccataccaagacgggggatattgaata-taatccaagtctgtcacagcgtcactccaaggaccaacaatgcgcatatcaggaa |
43805448 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 31 - 379
Target Start/End: Original strand, 8410898 - 8411241
Alignment:
| Q |
31 |
aaaccacaccaatatggtggatcttgaataatagtccaagtctgttacgacatcactccaaggaccaacaatgtgcatatcaggaaatttgatactatgt |
130 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| |||||||| | ||||||||| |||| || ||||||||||||||||||||| ||||||| |||| ||| |
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| T |
8410898 |
aaaccacaccaagatggtggttcttgaata-tagtccaaatatgttacgacgacacttcagggaccaacaatgtgcatatcaagaaatttactactttgt |
8410996 |
T |
|
| Q |
131 |
tggtcttctctttgtttctcaatcagctcagtggtctgaacatcttcaatctgtgttgattgcacacgagctgctccaacagagatgctagtagacaacc |
230 |
Q |
| |
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||| ||||||||||| ||| || | | ||| ||||||||||||| |||||||||||||||| |||||||||||||| | ||||||||||| ||| |
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| T |
8410997 |
tggatttctctttgttcctcggtcgtc---gaggtatgaacatcttcaaactgtgttgattgcacaagagctgctccaacataaatgctagtagataac- |
8411092 |
T |
|
| Q |
231 |
tcttcctcaaagttaataacatttcttatcagtgcactagtttctacctccttggaccttattatatcactaataataggatcttcatctgccacacctt |
330 |
Q |
| |
|
|||| ||||| ||||||||||| || || |||| ||||||||||||||| || |||||| |||||| | ||||||||| || |||| || ||| ||| |
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|
| T |
8411093 |
tctttctcaaggttaataacatctcctaccagtacactagtttctacctttttagaccttgttatattaagaataatagggtcatcatatgtcacgactt |
8411192 |
T |
|
| Q |
331 |
tacgacaatctttcactacatactttttagggtcatgtttgaattgttt |
379 |
Q |
| |
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||| ||||||||||| |||||| |||||||| |||||||| ||||||| |
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|
| T |
8411193 |
tacttcaatctttcaccacataccttttagggacatgtttggattgttt |
8411241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 12737307 - 12737207
Alignment:
| Q |
15 |
gacattggaagattctaaaccacaccaatatggtggatcttgaataatagtccaagtctgttacgacatcactccaaggaccaacaatgtgcatatcagg |
114 |
Q |
| |
|
|||||||||||| ||||||| ||||| |||| |||||||||||| || || ||||| || || || ||||||||||||||||| ||| |||||||||| |
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| T |
12737307 |
gacattggaagaacataaaccataccaagatgggggatcttgaata-taatctaagtccgtcacaacgtcactccaaggaccaacgatgcgcatatcagg |
12737209 |
T |
|
| Q |
115 |
aa |
116 |
Q |
| |
|
|| |
|
|
| T |
12737208 |
aa |
12737207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 147
Target Start/End: Complemental strand, 10866051 - 10865937
Alignment:
| Q |
31 |
aaaccacaccaatatggtggatcttgaataatagtccaagtctgttacgacatcactccaaggaccaacaatgtgcatatcaggaaatttgatactatgt |
130 |
Q |
| |
|
|||||| ||||| | || ||||| |||||| || ||||||||||| || | ||||||||||||||||||||| |||||| ||| |||| | | |||||| |
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| T |
10866051 |
aaaccataccaagacgggggatcctgaata-taatccaagtctgtgactgcgtcactccaaggaccaacaatgcgcatatgagg-aattcgttgctatgt |
10865954 |
T |
|
| Q |
131 |
tggtcttctctttgttt |
147 |
Q |
| |
|
| |||||| |||||||| |
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| T |
10865953 |
ttgtcttcactttgttt |
10865937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 276033 - 276152
Alignment:
| Q |
15 |
gacattggaagattctaaaccacaccaatatggtggatcttgaataatagtccaagtctgttacgacatcactccaaggaccaacaatgtgcatatcagg |
114 |
Q |
| |
|
|||||||||||| ||||||| ||||| |||| ||||||||| || || || ||||| || || || |||||||||||||||| ||| ||||||||| |
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| T |
276033 |
gacattggaagaacataaaccataccaagatgggggatcttgatta-taatctaagtccgtcacaacgtcactccaaggaccaaggatgcgcatatcaga |
276131 |
T |
|
| Q |
115 |
aaatttgatactatgttggtc |
135 |
Q |
| |
|
|| |||| | || |||||||| |
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| T |
276132 |
aagtttgttgctctgttggtc |
276152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 639816 - 639697
Alignment:
| Q |
15 |
gacattggaagattctaaaccacaccaatatggtggatcttgaataatagtccaagtctgttacgacatcactccaaggaccaacaatgtgcatatcagg |
114 |
Q |
| |
|
|||||||||||| ||||||| ||||| |||| ||||||||| || || || ||||| || || || |||||||||||||||| ||| ||||||||| |
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|
| T |
639816 |
gacattggaagaacataaaccataccaagatgggggatcttgatta-taatctaagtccgtcacaacgtcactccaaggaccaaggatgcgcatatcaga |
639718 |
T |
|
| Q |
115 |
aaatttgatactatgttggtc |
135 |
Q |
| |
|
|| |||| | || |||||||| |
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|
| T |
639717 |
aagtttgttgctctgttggtc |
639697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 825622 - 825503
Alignment:
| Q |
15 |
gacattggaagattctaaaccacaccaatatggtggatcttgaataatagtccaagtctgttacgacatcactccaaggaccaacaatgtgcatatcagg |
114 |
Q |
| |
|
|||||||||||| ||||||| ||||| |||| ||||||||| || || || ||||| || || || |||||||||||||||| ||| ||||||||| |
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| T |
825622 |
gacattggaagaacataaaccataccaagatgggggatcttgatta-taatctaagtccgtcacaacgtcactccaaggaccaaggatgcgcatatcaga |
825524 |
T |
|
| Q |
115 |
aaatttgatactatgttggtc |
135 |
Q |
| |
|
|| |||| | || |||||||| |
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|
| T |
825523 |
aagtttgttgctctgttggtc |
825503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 20424926 - 20424806
Alignment:
| Q |
15 |
gacattggaagattctaaaccacaccaatatggtggatcttgaataatagtccaagtctgttacgacatcactccaaggaccaacaatgtgcatatcagg |
114 |
Q |
| |
|
|||||||||||| |||||||| ||||| |||| ||||||||| || ||||| |||||||| || | |||||||||| |||||| ||| |||||||||| |
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|
| T |
20424926 |
gacattggaagaacctaaaccataccaagatgggggatcttgatta-tagtctaagtctgtcacagcgtcactccaagaaccaactatgcgcatatcagg |
20424828 |
T |
|
| Q |
115 |
aaatttgatactatgttggtct |
136 |
Q |
| |
|
||||||| | || ||||||||| |
|
|
| T |
20424827 |
aaatttgttgctttgttggtct |
20424806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 5430598 - 5430544
Alignment:
| Q |
81 |
catcactccaaggaccaacaatgtgcatatcaggaaatttgatactatgttggtc |
135 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||| || ||||||||| |
|
|
| T |
5430598 |
catcactccaaggaccaacaatatgcatatccggaaatttgttatgatgttggtc |
5430544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0604 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0604
Description:
Target: scaffold0604; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 4351 - 4231
Alignment:
| Q |
15 |
gacattggaagattctaaaccacaccaatatggtggatcttgaataatagtccaagtctgttacgacatcactccaaggaccaacaatgtgcatatcagg |
114 |
Q |
| |
|
|||||||||||| |||||||| ||||| |||| | ||||||| || || || |||| | | || || |||||||||| |||||| ||| |||||||||| |
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|
| T |
4351 |
gacattggaagaacctaaaccataccaagatggggaatcttgatta-taatctaagtttatcacaacgtcactccaagtaccaacgatgcgcatatcagg |
4253 |
T |
|
| Q |
115 |
aaatttgatactatgttggtct |
136 |
Q |
| |
|
||||| | | || ||||||||| |
|
|
| T |
4252 |
aaattcgttgctttgttggtct |
4231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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