View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10641_low_9 (Length: 391)

Name: NF10641_low_9
Description: NF10641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10641_low_9
NF10641_low_9
[»] chr7 (2 HSPs)
chr7 (18-388)||(2181032-2181401)
chr7 (318-391)||(2181402-2181475)
[»] chr2 (1 HSPs)
chr2 (193-253)||(15199665-15199725)
[»] scaffold0018 (1 HSPs)
scaffold0018 (209-251)||(191809-191851)
[»] chr6 (1 HSPs)
chr6 (193-234)||(9321570-9321611)
[»] chr3 (1 HSPs)
chr3 (192-241)||(5431720-5431769)
[»] chr5 (1 HSPs)
chr5 (304-360)||(18901503-18901559)
[»] chr8 (2 HSPs)
chr8 (256-353)||(18358408-18358505)
chr8 (193-250)||(1811945-1812002)


Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 2181032 - 2181401
Alignment:
Q  18 gtaagtttacttttcatgttcttttattttgacttattaatgatttttaataataaaagaaaattcaacaacatttatatggatcagttttgtataatac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2181032 gtaagtttacttttcatgttcttttattttgacttattaatgatttttaataataaaagaaaattcaacaacatttatatggatcagttttgtataatac 2181131  T
Q  118 taatagttgaatcgcttcagatgctattcagccatctcgagagaaagttagtcatccttatgccatttcaaaatagagtttaatggtgatacactatcgg 217  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2181132 taatagttgaatcgcttcagatgctattcagccacctcgagagaaagttagtcatccttatgccatttcaaaatagagtttaatggtgatacactatcgg 2181231  T
Q  218 tgtaaattagttttacattgacattcaatgaaaactccatattgccacataaaatccaatttgtaaccacatcttaatataactgcaaaatattgaattc 317  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2181232 cgtaaattagttttacattgacattcaatgaaaactccatattgccacat-aaatccaatttgtaaccacatcttaatataactgcaaaatattgaattc 2181330  T
Q  318 tcattagttgtcagtgtaaaattagtctacaatgacagtgcatcttccattctgtcttagatattctctaa 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2181331 tcattagttgtcagtgtaaaattagtctacaatgacagtgcatcttccattctgtcttagatattctctaa 2181401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 318 - 391
Target Start/End: Original strand, 2181402 - 2181475
Alignment:
Q  318 tcattagttgtcagtgtaaaattagtctacaatgacagtgcatcttccattctgtcttagatattctctaagag 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2181402 tcattagttgtcagtgtaaaattagtctacaatgacagtgcatcttccattctgtcttagatattctctaagag 2181475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 15199725 - 15199665
Alignment:
Q  193 gagtttaatggtgatacactatcggtgtaaattagttttacattgacattcaatgaaaact 253  Q
    ||||||||||| ||| |||| ||  |||||||||||||||||||||||| |||||||||||    
T  15199725 gagtttaatggagatgcactgtctatgtaaattagttttacattgacatacaatgaaaact 15199665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 191851 - 191809
Alignment:
Q  209 cactatcggtgtaaattagttttacattgacattcaatgaaaa 251  Q
    |||||| |||||||| |||||||||||||||||||||||||||    
T  191851 cactattggtgtaaaatagttttacattgacattcaatgaaaa 191809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 9321611 - 9321570
Alignment:
Q  193 gagtttaatggtgatacactatcggtgtaaattagttttaca 234  Q
    ||||||||||||||| |||| |||||||||||||||||||||    
T  9321611 gagtttaatggtgatgcactgtcggtgtaaattagttttaca 9321570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 5431720 - 5431769
Alignment:
Q  192 agagtttaatggtgatacactatcggtgtaaattagttttacattgacat 241  Q
    |||||||||| || ||||||| ||||||||||||||||||||| ||||||    
T  5431720 agagtttaatagtcatacactgtcggtgtaaattagttttacactgacat 5431769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 360
Target Start/End: Complemental strand, 18901559 - 18901503
Alignment:
Q  304 aaaatattgaattctcattagttgtcagtgtaaaattagtctacaatgacagtgcat 360  Q
    |||||| || ||||||||||| ||||| |||||||||||| |||| |||||||||||    
T  18901559 aaaatactggattctcattagatgtcaatgtaaaattagtttacactgacagtgcat 18901503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 353
Target Start/End: Original strand, 18358408 - 18358505
Alignment:
Q  256 atattgccacataaaatccaatttgtaaccacatcttaatat-aactgcaaaatattgaattctcattagttgtcagtgtaaaattagtctacaatgac 353  Q
    |||| |||||||||| |||| ||||||||||||| |||| || |||||||| ||| |  ||||||||| |  ||||||||||||||||| |||| ||||    
T  18358408 atatcgccacataaa-tccactttgtaaccacattttaaaattaactgcaacatacttgattctcattggacgtcagtgtaaaattagtttacactgac 18358505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 1812002 - 1811945
Alignment:
Q  193 gagtttaatggtgatacactatcggtgtaaattagttttacattgacattcaatgaaa 250  Q
    ||||||||||||||| |||| ||| || | |||||||||||| |||||| ||||||||    
T  1812002 gagtttaatggtgatgcactgtcgctgcatattagttttacactgacatccaatgaaa 1811945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University