View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10642_low_1 (Length: 451)
Name: NF10642_low_1
Description: NF10642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10642_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 4e-88; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 4612124 - 4611952
Alignment:
| Q |
18 |
cattgttcaacaattttttgttgagtaagagtagccatgggaagagctccttgttgtgacaaagaaaaggttaagagaggaccatggtctcctgatgaag |
117 |
Q |
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| T |
4612124 |
cattgttcaacaattttttgttgagtaagagtagtcatgggaagagctccttgttgtgacaaagaaaaagttaagagaggaccatggtctcctgatgaag |
4612025 |
T |
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| Q |
118 |
atgcaacactcaagagttatcttgcaactcatggcactgttggaaattggattgcattgcccaaaaaagctgg |
190 |
Q |
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| T |
4612024 |
atgcaacactcaagagttatcttgcaactcatggcactgttggaaattggattgcattgcccaaaaaagctgg |
4611952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 339 - 442
Target Start/End: Complemental strand, 4611803 - 4611700
Alignment:
| Q |
339 |
gatatgtttttcttccgattgaaggattattgacatacatgaaaatgaaagaacttttttccccatagcaagtataaaaagaggaaatttcattcaactt |
438 |
Q |
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| T |
4611803 |
gatatgtttttcttccgattgaaggattattgacatacatgaaaatgaaagaacttttttccccttagcaagtataaaaagaggaaatttcattcaactt |
4611704 |
T |
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| Q |
439 |
tgtc |
442 |
Q |
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|||| |
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| T |
4611703 |
tgtc |
4611700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 4685349 - 4685415
Alignment:
| Q |
53 |
catgggaagagctccttgttgtgacaaagaaaaggttaagagaggaccatggtctcctgatgaagat |
119 |
Q |
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| T |
4685349 |
catgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagat |
4685415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 41208914 - 41208845
Alignment:
| Q |
54 |
atgggaagagctccttgttgtgacaaagaaaaggttaagagaggaccatggtctcctgatgaagatgcaa |
123 |
Q |
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| T |
41208914 |
atgggaagatctccttgctgtgacaaagctaatgtaaagaaaggtccatggtctcctgaagaagatgcaa |
41208845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 2460470 - 2460536
Alignment:
| Q |
53 |
catgggaagagctccttgttgtgacaaagaaaaggttaagagaggaccatggtctcctgatgaagat |
119 |
Q |
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| T |
2460470 |
catgggaagaccaccttgttgtgacaaagaaggtgttaaaaaaggaccatggactcctgaagaagat |
2460536 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 40254682 - 40254617
Alignment:
| Q |
53 |
catgggaagagctccttgttgtgacaaagaaaaggttaagagaggaccatggtctcctgatgaaga |
118 |
Q |
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| T |
40254682 |
catggggagagctccttgttgtgacaaagccaatgtcaagagaggtccatggtcacctgaagaaga |
40254617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 21173502 - 21173567
Alignment:
| Q |
54 |
atgggaagagctccttgttgtgacaaagaaaaggttaagagaggaccatggtctcctgatgaagat |
119 |
Q |
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| T |
21173502 |
atgggaagagctccatgttgtgacaaaacaagtgttaagagaggtccatggtcaccagaagaagat |
21173567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 53557002 - 53557078
Alignment:
| Q |
54 |
atgggaagagctccttgttgtgacaaagaaaaggttaagagaggaccatggtctcctgatgaagatgcaacactcaa |
130 |
Q |
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| T |
53557002 |
atgggtagagctccatgctgtgacaaggctaacgtgaagaaaggaccttggtctcctgaagaagatgctacactcaa |
53557078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 40820235 - 40820170
Alignment:
| Q |
54 |
atgggaagagctccttgttgtgacaaagaaaaggttaagagaggaccatggtctcctgatgaagat |
119 |
Q |
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| T |
40820235 |
atgggaagagctccttgctgtgacaaagcaaatgtgaagaaaggaccatggtcaccagaagaagat |
40820170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 5113167 - 5113245
Alignment:
| Q |
53 |
catgggaagagctccttgttgtgacaaagaaaaggttaagagaggaccatggtctcctgatgaagatgcaacactcaag |
131 |
Q |
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| T |
5113167 |
catgggaagagctccttgctgtgacaaagccaatgtcaaaaaaggtccatggtcacctgaagaagatgctaaactcaag |
5113245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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