View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10642_low_10 (Length: 241)
Name: NF10642_low_10
Description: NF10642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10642_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 54247459 - 54247235
Alignment:
| Q |
1 |
tgacatatgtaatttcttcagctcacctttaatccaaacattcaacttgaaggagaaaaagaaaatttaatgtagagggttttcaacttttcctttagtt |
100 |
Q |
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| T |
54247459 |
tgacatatgtaatttcttcagctcacctttaatccaaacattcaacttgaaggagaaaaagaaaatttaatgtagagtgttttcaacttttcctttagtt |
54247360 |
T |
|
| Q |
101 |
atccttatggaagaaattaaatacgataattcttttttgacaaacatataagatatttannnnnnngacacagtaagatgatttgttattacatgtgcac |
200 |
Q |
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| T |
54247359 |
atccttatggaagaaattaaatacgataattcttttttgacaaacatataagatatttatttttttgacacagtaagatgatttgttattacatgtgcac |
54247260 |
T |
|
| Q |
201 |
taaagcctttgtgaaacgaagcacg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
54247259 |
taaagcctttgtgaaacgaagcacg |
54247235 |
T |
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