View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10642_low_13 (Length: 228)

Name: NF10642_low_13
Description: NF10642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10642_low_13
NF10642_low_13
[»] chr4 (21 HSPs)
chr4 (1-224)||(40806420-40806643)
chr4 (1-226)||(6333573-6333806)
chr4 (1-228)||(30193576-30193806)
chr4 (1-228)||(32136949-32137179)
chr4 (1-228)||(40899680-40899910)
chr4 (1-228)||(48996336-48996566)
chr4 (1-228)||(52344965-52345194)
chr4 (1-185)||(10218940-10219127)
chr4 (1-216)||(23937130-23937348)
chr4 (1-227)||(8176209-8176428)
chr4 (1-228)||(31301656-31301877)
chr4 (1-215)||(43630808-43631007)
chr4 (146-228)||(26477789-26477871)
chr4 (21-114)||(29639732-29639828)
chr4 (104-228)||(52345214-52345328)
chr4 (164-228)||(29639994-29640058)
chr4 (164-228)||(42558082-42558146)
chr4 (164-228)||(50570618-50570682)
chr4 (164-228)||(29643367-29643431)
chr4 (164-228)||(36078683-36078747)
chr4 (162-228)||(5261451-5261517)
[»] chr7 (26 HSPs)
chr7 (1-228)||(13852565-13852793)
chr7 (1-212)||(24360905-24361119)
chr7 (3-228)||(43429427-43429655)
chr7 (1-186)||(22366707-22366895)
chr7 (34-228)||(42910277-42910469)
chr7 (1-228)||(32823853-32824073)
chr7 (1-216)||(31876254-31876467)
chr7 (1-228)||(36921152-36921379)
chr7 (1-186)||(10069820-10070008)
chr7 (83-216)||(27054336-27054469)
chr7 (1-200)||(48675369-48675571)
chr7 (1-227)||(47903491-47903705)
chr7 (83-227)||(18672817-18672961)
chr7 (102-228)||(5932980-5933100)
chr7 (1-186)||(31982299-31982473)
chr7 (164-228)||(3211802-3211866)
chr7 (164-228)||(10672178-10672242)
chr7 (164-228)||(47070027-47070091)
chr7 (164-228)||(47204117-47204181)
chr7 (1-78)||(36508947-36509024)
chr7 (119-179)||(36509024-36509084)
chr7 (2-48)||(5932902-5932948)
chr7 (1-59)||(18672962-18673020)
chr7 (183-228)||(11206038-11206083)
chr7 (164-228)||(12117959-12118023)
chr7 (181-228)||(8768326-8768373)
[»] chr6 (11 HSPs)
chr6 (2-223)||(13801578-13801802)
chr6 (1-228)||(33550580-33550810)
chr6 (1-228)||(35039534-35039764)
chr6 (1-215)||(25137401-25137618)
chr6 (1-216)||(15859985-15860202)
chr6 (48-228)||(10591142-10591325)
chr6 (1-228)||(10390636-10390852)
chr6 (164-228)||(5866678-5866742)
chr6 (164-228)||(12270905-12270969)
chr6 (137-227)||(10493988-10494078)
chr6 (22-61)||(10494223-10494262)
[»] chr1 (18 HSPs)
chr1 (1-228)||(33474698-33474928)
chr1 (1-228)||(39256231-39256461)
chr1 (1-228)||(33910372-33910602)
chr1 (1-227)||(24910650-24910879)
chr1 (1-214)||(16529101-16529317)
chr1 (1-228)||(45692053-45692278)
chr1 (13-228)||(32954348-32954561)
chr1 (1-175)||(44918798-44918975)
chr1 (1-226)||(1160631-1160843)
chr1 (83-223)||(11899381-11899521)
chr1 (1-186)||(51252058-51252246)
chr1 (1-149)||(29389289-29389440)
chr1 (111-228)||(6722418-6722529)
chr1 (164-228)||(5154993-5155057)
chr1 (164-228)||(8211639-8211703)
chr1 (164-228)||(20494094-20494158)
chr1 (164-224)||(29707741-29707801)
chr1 (1-30)||(11899272-11899301)
[»] chr5 (28 HSPs)
chr5 (1-228)||(2226479-2226709)
chr5 (1-216)||(12680683-12680901)
chr5 (1-228)||(12165539-12165769)
chr5 (1-210)||(36103225-36103437)
chr5 (1-228)||(9161239-9161467)
chr5 (1-224)||(30265393-30265618)
chr5 (1-228)||(32520821-32521046)
chr5 (1-227)||(332878-333109)
chr5 (1-228)||(38433942-38434172)
chr5 (1-160)||(35893242-35893405)
chr5 (1-222)||(10174329-10174536)
chr5 (3-216)||(36176728-36176924)
chr5 (2-172)||(42544911-42545086)
chr5 (1-212)||(23780990-23781182)
chr5 (1-212)||(23867943-23868135)
chr5 (101-216)||(36176497-36176612)
chr5 (1-127)||(9988586-9988715)
chr5 (1-84)||(38334707-38334790)
chr5 (2-179)||(17084520-17084700)
chr5 (164-228)||(666928-666992)
chr5 (164-228)||(701566-701630)
chr5 (164-228)||(8409335-8409399)
chr5 (164-228)||(11917804-11917868)
chr5 (164-228)||(27885743-27885807)
chr5 (164-228)||(30002347-30002411)
chr5 (164-228)||(38334411-38334475)
chr5 (164-228)||(15068825-15068889)
chr5 (182-228)||(42545822-42545868)
[»] chr2 (15 HSPs)
chr2 (1-228)||(25297852-25298082)
chr2 (13-228)||(44035578-44035796)
chr2 (1-228)||(11376143-11376368)
chr2 (1-228)||(17916454-17916686)
chr2 (1-216)||(44979383-44979601)
chr2 (1-228)||(19936721-19936946)
chr2 (1-228)||(34910565-34910791)
chr2 (59-228)||(18360115-18360287)
chr2 (1-114)||(20420456-20420572)
chr2 (164-228)||(9811739-9811803)
chr2 (164-228)||(20420777-20420841)
chr2 (164-228)||(36412957-36413021)
chr2 (181-228)||(16579006-16579053)
chr2 (1-63)||(18357527-18357589)
chr2 (163-228)||(42785126-42785191)
[»] chr3 (16 HSPs)
chr3 (1-228)||(6003989-6004219)
chr3 (16-224)||(21586447-21586657)
chr3 (1-228)||(35531758-35531983)
chr3 (1-179)||(50562226-50562407)
chr3 (1-192)||(33002774-33002968)
chr3 (2-227)||(32880554-32880787)
chr3 (1-176)||(39098195-39098373)
chr3 (1-224)||(43030684-43030895)
chr3 (1-122)||(27641870-27641994)
chr3 (129-228)||(48032737-48032836)
chr3 (164-228)||(10369610-10369674)
chr3 (164-228)||(34794923-34794987)
chr3 (164-228)||(35401830-35401894)
chr3 (164-228)||(51149328-51149392)
chr3 (164-228)||(4669253-4669317)
chr3 (164-216)||(33361312-33361364)
[»] chr8 (13 HSPs)
chr8 (1-228)||(36827388-36827618)
chr8 (8-228)||(14549492-14549710)
chr8 (1-216)||(30392337-30392554)
chr8 (1-210)||(10661405-10661617)
chr8 (1-228)||(18169627-18169852)
chr8 (1-228)||(18633193-18633418)
chr8 (1-224)||(33068849-33069075)
chr8 (5-216)||(3682180-3682388)
chr8 (1-228)||(36909944-36910158)
chr8 (82-211)||(6200549-6200678)
chr8 (89-228)||(44673068-44673211)
chr8 (173-224)||(3006232-3006283)
chr8 (181-228)||(5802552-5802599)
[»] scaffold0059 (2 HSPs)
scaffold0059 (1-228)||(69131-69361)
scaffold0059 (83-228)||(77237-77382)
[»] scaffold0029 (2 HSPs)
scaffold0029 (1-225)||(40173-40400)
scaffold0029 (16-225)||(47369-47581)
[»] scaffold0013 (2 HSPs)
scaffold0013 (21-228)||(106312-106522)
scaffold0013 (1-191)||(128898-129092)
[»] scaffold0308 (1 HSPs)
scaffold0308 (164-228)||(5513-5577)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 40806643 - 40806420
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatgcaacaatgaaaaaatt 100  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  40806643 caaattattggaaagtaaaggaaacaaatttatcattggaaatgaattgaaagagatggaaaggaattagaatcgaacctgttgcaacaatgaaaaaatc 40806544  T
Q  101 gaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttgctg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  40806543 gaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggtttggtttggttcagttgctg 40806444  T
Q  201 agatgcaaaccgcaaatcgaaccg 224  Q
    |||||||||||||||||| |||||    
T  40806443 agatgcaaaccgcaaatcaaaccg 40806420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 6333573 - 6333806
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   |||| ||| ||||    
T  6333573 caaattattgggaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaatgaattagaatcgaacctgatggtgcaacgatggaaaa 6333672  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggttt-----ggcttggtttggttc 192  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     || ||||||||||||    
T  6333673 attgaatcaaaagagattattcttgagctatgtaattgggctagtacatatttaagtaatattcattattcttgcggtttagtttggtttggtttggttc 6333772  T
Q  193 agttgctgagatgcaaaccgcaaatcgaaccgaa 226  Q
     |||||| |||||||| |||||||||||||||||    
T  6333773 ggttgctaagatgcaagccgcaaatcgaaccgaa 6333806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 30193806 - 30193576
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||   |||||||| ||||    
T  30193806 caaattattgggaagtaaaggaaacaaattcatcactgtaaatgaattgaaagagatggaaaggaattaaaatcgaacctgatggtgcaacaatggaaaa 30193707  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || ||||||||||| ||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  30193706 atcgaatcaaaagaaattattcttgagctatgtaattgggataatacatatttaagtaatattcattattcttgcggtatggtttggtttggttcggttg 30193607  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||||||||||||| |||||  ||||||||||    
T  30193606 ctgagatgcaaactgcaaactgaaccgaacc 30193576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 32136949 - 32137179
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||   |||||||||||||    
T  32136949 caaatgattgggaagtaaaggaaacaaattcatcacttgaaatgaattgaaagagatggaaaggaattaaaatcgaacctgatggtgcaacaatgaaaaa 32137048  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || |||| |||||| ||||||||| ||||||||||||| |||||||||| |||||||||||||||| ||||||| ||||||| ||| |||||||| ||||    
T  32137049 atcgaataaaaagaaattattcttaagctatgtaattgggctagtacatgtttaagtaatattcatcattcttgtggtttggtttgatttggttcggttg 32137148  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||||||||||||||||||| | |||||||||    
T  32137149 ctgagatgcaaaccgcaaaccaaaccgaacc 32137179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 40899910 - 40899680
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||  |||||   |||||||| ||||    
T  40899910 caaattattggtaagtaaaggaaataaattcatcactggaaatgaatttaaagagatggaaaggaattagaattgaatttgatggtgcaacaatggaaaa 40899811  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || ||||||||||||||||| |||| |||||||||||| |||| ||||| ||||||||| |||||||||||||||||||||| |||||||||||| ||||    
T  40899810 atcgaatcaaaagagattatccttgggctatgtaattgggctattacatgtttaagtaacattcattattcttgcggtttggtttggtttggttcggttg 40899711  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||||||||||||||||||| |||||| ||||    
T  40899710 ctgagatgcaaaccgcaaaccgaaccaaacc 40899680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 48996336 - 48996566
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||  ||| ||| |||||||||| ||||||| |||| ||||||||||| |||||||||||||||||||||  |||||   |||||||||||||    
T  48996336 caaattattgagaagaaaatgaaacaaatttatcactgaaaataaattgaaagaggtggaaaggaattagaatcgaatttgatggtgcaacaatgaaaaa 48996435  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || |||||||||||||||||||||  |||||||||||  |||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  48996436 atcgaatcaaaagagattattcttaggctatgtaattaggctagtacatgtttaagtaatattcattattcttgcggtttggtttggtttggttcggttg 48996535  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||||||||||||||||||||| |||||||||    
T  48996536 ctgagatgcaaaccgcaaatcaaaccgaacc 48996566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 52344965 - 52345194
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg--caacaatgaaaaaa 98  Q
    ||||||||||||||||||||||||||||||||||| || | |||||||||||||| ||||||  | ||||||||||||||||||  ||| |||| |||||    
T  52344965 caaattattggaaagtaaaggaaacaaattcatcagtgaatatgaattgaaagagttggaaataagttagaatcgaacctgatgtgcaataatggaaaaa 52345064  T
Q  99 ttgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttgc 198  Q
    |  ||||||||| || ||||||||||||||| ||| |  ||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  52345065 tcaaatcaaaagcgactattcttgagctatgcaatcggactagtacatgtttaagtaatattcattattcttgcggtttggtttggtttggttcggttgc 52345164  T
Q  199 tgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||||||||||||||||| |||||||||||    
T  52345165 tgagatgcaaaccgcaaaccgaaccgaacc 52345194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 10218940 - 10219127
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||  ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||   |||||||| ||||    
T  10218940 caaattattgagaagtaaaagaaacaaattcatcactgaaaatgaattgaaagagatggaaaggaattagaatcgaaccagatggtgcaacaatggaaaa 10219039  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggt 185  Q
    ||  ||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||    
T  10219040 atctaatcaaatgagattattcttgagctatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttggtttggt 10219127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 23937348 - 23937130
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| || |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||   |||||||| ||||    
T  23937348 caaattattgggaaataaatgaaacaaattcatcactagaaatgaattgaaagagatggaaaggaattagaatagaacatgatggtgcaacaatggaaaa 23937249  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    ||  |||| |||||||||||||||||| ||||||||||  |||||| || ||||||||||||| |||||||||||||||| | |||||||||||||||||    
T  23937248 atcaaatctaaagagattattcttgagttatgtaattggactagtatatgtttaagtaatatttattattcttgcggtttagtttggtttggttcagttg 23937149  T
Q  198 ctgagatgcaaaccgcaaa 216  Q
     ||||||||||||| ||||    
T  23937148 ttgagatgcaaaccacaaa 23937130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 8176428 - 8176209
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| ||| ||| |||| |||||||| |||| ||||||||| ||||||||||||||||||||| |||||||||||||   |||||||| ||||    
T  8176428 caaattattgggaagaaaaagaaaaaaattcataactgaaaatgaattaaaagagatggaaaggaattaggatcgaacctgatggtgcaacaatggaaaa 8176329  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || |||||||||||||||||| ||| |||||||||||| |||||||||| |||||||||| ||||||||||||||||||||| |||          ||||    
T  8176328 atcgaatcaaaagagattatttttgggctatgtaattgggctagtacatgtttaagtaatcttcattattcttgcggtttggtttg----------gttg 8176239  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaac 227  Q
    ||||||||||||||||||||||||||||||    
T  8176238 ctgagatgcaaaccgcaaatcgaaccgaac 8176209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 31301656 - 31301877
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctga---tgcaacaatgaaaaa 97  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||   |||||||||||||||    
T  31301656 caaattattggaaagaaaaggaaacaaattcatcactggaaatgaattgaaggagatggaaatgaattagaatcgaaactgatggtgcaacaatgaaaaa 31301755  T
Q  98 attgaat-caaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagtt 196  Q
     | ||||  |||| | |||||||||||| |||||||||| |||| ||||  ||||||||||||| |||||||||||          |||||||||| |||    
T  31301756 gtcgaataaaaaaaaaattattcttgagttatgtaattgggctaatacaagtttaagtaatattgattattcttgc----------ggtttggttcggtt 31301845  T
Q  197 gctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||||||||||||||||||| ||||| |||||    
T  31301846 gctgagatgcaaaccgcaaaccgaactgaacc 31301877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 43630808 - 43631007
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaac---ctgatgcaacaatgaaaaa 97  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    || |||||||||||||||    
T  43630808 caaattattgggaagtaaaggaaacaaattcatcactgcaaatgaattgaaagagatggaaaggaattagaatcgaacttaatggtgcaacaatgaaaaa 43630907  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
                      |||||||||||||||| ||| |||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  43630908 ------------------attcttgagctatgtagttgggctattacatttttaagtaatattcattattcttgcggtttggtttggtttggttcggttg 43630989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 146 - 228
Target Start/End: Complemental strand, 26477871 - 26477789
Alignment:
Q  146 tatttaagtaatattcattattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||||||||||||||||||||||||| || |||| |||||||||||| ||||||||||||||||||||||| | |||||||||    
T  26477871 tatttaagtaatattcattattcttgtggattggtttggtttggttcggttgctgagatgcaaaccgcaaaccaaaccgaacc 26477789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 29639732 - 29639828
Alignment:
Q  21 gaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacc---tgatgcaacaatgaaaaaattgaatcaaaagagat 114  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||   ||||||||||||| |||||| |||| ||| |||||    
T  29639732 gaaacaaattcatcattggaaatgaattgaaggagatggaaaggaattagaatcgaacctgatgatgcaacaatggaaaaatcgaattaaaggagat 29639828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 228
Target Start/End: Original strand, 52345214 - 52345328
Alignment:
Q  104 tcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttgctgaga 203  Q
    ||||||| || ||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||          |||||||||| ||||||||||    
T  52345214 tcaaaagcgactattcttgagctatgcaattgggctagtacatgtttaagtaatattcattattcttgc----------ggtttggttcggttgctgaga 52345303  T
Q  204 tgcaaaccgcaaatcgaaccgaacc 228  Q
    |||||||| |||| |||||||||||    
T  52345304 tgcaaaccacaaaccgaaccgaacc 52345328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 29639994 - 29640058
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  29639994 tatttttgcggtttggtttggtttggttcggttgctgagatgcaaaccgcaaaccgaaccgaacc 29640058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 42558082 - 42558146
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  42558082 tatttttgcggtttggtttggtttggttcggttgctgagatgcaaaccgcaaaccgaaccgaacc 42558146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 50570682 - 50570618
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  50570682 tatttttgcggtttggtttggtttggttcggttgctgagatgcaaaccgcaaaccgaaccgaacc 50570618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 29643431 - 29643367
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||| || |||| |||||||||||    
T  29643431 tatttttgcggtttggtttggtttggttcggttgctgagatgcaagccacaaaccgaaccgaacc 29643367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 36078683 - 36078747
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||| |||||  ||||||||||    
T  36078683 tatttttgcggtttggtttggtttggttcggttgctgagatgcaaactgcaaactgaaccgaacc 36078747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 5261517 - 5261451
Alignment:
Q  162 attattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||||||||||| |||||| ||| ||||||||  || ||||||||||||||||||| |||||||||||    
T  5261517 attattcttgcagtttggtttgatttggttcgatttctgagatgcaaaccgcaaaccgaaccgaacc 5261451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 13852565 - 13852793
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatgc-aacaatgaaaaaat 99  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  13852565 caaattattggaaagtaaaggaaacaaattcatcactgtaaatgaattgaaagagatggaaaggaattataatcgaacctgatggtaacaatgaaaaaat 13852664  T
Q  100 tgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttgct 199  Q
     ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||    
T  13852665 cgaatcaaaagagattattcttgagctatgtaattgagttagtacatatttaaataatattcattattcttgcagtttggtttggtttggttcagttgct 13852764  T
Q  200 gagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||||||||||||||||  ||||||||||    
T  13852765 gagatgcaaaccgcaaacagaaccgaacc 13852793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 24361119 - 24360905
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||   |||||||||||||    
T  24361119 caaattattgggaagtaaaggaaacaaattcatcactggaaatgaattgaaagaaatggaaaggaattagaattgaacttgatggtgcaacaatgaaaaa 24361020  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||    
T  24361019 atcgaatcaaaagggattattcttgagctatgtaattgggctagtacatatttaagtaatagtcattattcttgcggtttggtttggtttggttcggttg 24360920  T
Q  198 ctgagatgcaaaccg 212  Q
    |||||| ||||||||    
T  24360919 ctgagacgcaaaccg 24360905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 3 - 228
Target Start/End: Original strand, 43429427 - 43429655
Alignment:
Q  3 aattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaaat 99  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||   |||||||| ||||||    
T  43429427 aattattggaaagtaaaggaaacaaattcatcattggaaatgaatcgaaagagatggaaaggaattagaattgaacctgatggtgcaacaatggaaaaat 43429526  T
Q  100 tgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttgct 199  Q
     ||||||||||||||| |||||||||||||||||||  | ||||||  ||||||||||| |||||||||||||||||||| |||||||||||| ||||||    
T  43429527 cgaatcaaaagagatttttcttgagctatgtaattggacgagtacacgtttaagtaatagtcattattcttgcggtttggtttggtttggttcggttgct 43429626  T
Q  200 gagatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||||||||||||||||| |||||||||||    
T  43429627 gagatgcaaaccgcaaaccgaaccgaacc 43429655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 22366707 - 22366895
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctga---tgcaacaatgaaaaa 97  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||| ||||    
T  22366707 caaattattgggaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatggtgcaacaatggaaaa 22366806  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtt 186  Q
    |  ||||  ||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||| ||||||    
T  22366807 accgaattgaaagagattattcttgagctatgtaattgggctagtacatgtttgagtaatattcattattcttgcggtttggtttggtt 22366895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 34 - 228
Target Start/End: Complemental strand, 42910469 - 42910277
Alignment:
Q  34 cactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaaattgaatcaaaagagattattcttgagctatgt 130  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||   |||||||| ||||||  |||||||||||||||||||||||||||||    
T  42910469 cactggaaatgaattgaaagagatggaaaggaattagaatcggacctgatggtgcaacaatggaaaaatcaaatcaaaagagattattcttgagctatgt 42910370  T
Q  131 aattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||     |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  42910369 aattgggctagtacatgtttaagtaatattcattattcttgcggt-----ttggtttggttcggttgctgagatgcaaaccgcaaaccgaaccgaacc 42910277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 32823853 - 32824073
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||||||||||| ||||||||||||||| ||  |||||||||||| |||||||||||||||||||||||||||||||   |||||||| ||||    
T  32823853 caaattattggaaagtaaatgaaacaaattcatcagtgagaatgaattgaaatagatggaaaggaattagaatcgaacctgatggtgcaacaatggaaaa 32823952  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || |||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||| |||          ||||    
T  32823953 atcgaatcaaaggagattattcttgagctatgtaattgggctagtacatgtttaagtaatattcattattcatgcggtttggtttg----------gttg 32824042  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||||||||||||||||||| |||||||||||    
T  32824043 ctgagatgcaaaccgcaaaccgaaccgaacc 32824073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 31876467 - 31876254
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||| | |||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||   |||||||| ||||    
T  31876467 caaattatttggaagtaaaggaaacaaagtcatcactggaaatgaattaaaagagatggaaaagaattagaatcgaatctgatggtgcaacaatggaaaa 31876368  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || |||| ||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||| ||||||||||| ||||||||     ||||    
T  31876367 atcgaattaaaagagattattcttgagctatgtaactgggctagtacatgtttaagtaatattcattatttttgcggtttggtttggtttg-----gttg 31876273  T
Q  198 ctgagatgcaaaccgcaaa 216  Q
    |||||||||||||||||||    
T  31876272 ctgagatgcaaaccgcaaa 31876254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 36921379 - 36921152
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctga---tgcaacaatgaaaaa 97  Q
    ||||||||||| ||||||| |||||||||| |||| || ||||||||||||||||||||||| |||||||||||||||||||   |||||||||||||||    
T  36921379 caaattattgggaagtaaaagaaacaaatttatcattgaaaatgaattgaaagagatggaaaagaattagaatcgaacctgatggtgcaacaatgaaaaa 36921280  T
Q  98 attgaatcaaaagagattattcttgagctatgtaatt--gagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagt 195  Q
    || |||||||||| |||||||||||||||||||||||  | | |||||||| ||||||||||||||||||||||||||||     |||||||||||| ||    
T  36921279 atcgaatcaaaagcgattattcttgagctatgtaattgggggttagtacatgtttaagtaatattcattattcttgcggt-----ttggtttggttcggt 36921185  T
Q  196 tgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||||||||||||||| ||||| | |||||||||    
T  36921184 tgctgagatgcaaactgcaaaccaaaccgaacc 36921152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 10069820 - 10070008
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctga---tgcaacaatgaaaaa 97  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||   |||||||||| ||||    
T  10069820 caaattattgggaagaaaaggaaacaaattcatcattggaaatgaattgaaggagatggaaaggaattagaatcaaacctgatggtgcaacaatggaaaa 10069919  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtt 186  Q
    ||  |||||||| |||||||||||| |||||||||||| ||  |||||  ||||||||||||| |||||||||||||||||| ||||||    
T  10069920 atcaaatcaaaaaagattattcttgggctatgtaattgggccggtacaagtttaagtaatattgattattcttgcggtttggtttggtt 10070008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 27054469 - 27054336
Alignment:
Q  83 tgcaacaatgaaaaaattgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggctt 182  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||    
T  27054469 tgcaacaatgaaaaaatcgaatcaaaagagattattcttgagttatgtaattgggctagtacatatttaagtaatattcattattcttgtggtttggttt 27054370  T
Q  183 ggtttggttcagttgctgagatgcaaaccgcaaa 216  Q
    ||||||||||  ||||||| ||||||||||||||    
T  27054369 ggtttggttcgattgctgatatgcaaaccgcaaa 27054336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 48675369 - 48675571
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctga---tgcaacaatgaaaaa 97  Q
    ||||||||| | |||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||| |||||||   |||||||||| || |    
T  48675369 caaattattaggaagtaaaggaaacaaattcatcactgaaaatgaattcaaagagatggaaatgaattagaatcaaacctgatggtgcaacaatggaata 48675468  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    ||  || |||||||| ||||| || ||||||||||||  |||| ||||| ||||||||||||| ||||||||| |||||||  || ||||||||||||||    
T  48675469 atcaaaccaaaagaggttattttttagctatgtaattaggctaatacatgtttaagtaatatttattattcttacggtttgattttgtttggttcagttg 48675568  T
Q  198 ctg 200  Q
    |||    
T  48675569 ctg 48675571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 47903491 - 47903705
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctga---tgcaacaatgaaaaa 97  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||   |||||||||||||||    
T  47903491 caaattattgggaaataaaggaaacaaattcatcactggaaatgaattgaaagatatggaaatgaattataatcgaacctgatggtgcaacaatgaaaaa 47903590  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || ||||| ||| | | ||||||||||||||||||||  |||||               ||||||||||||||| ||||||| ||| |||||||| ||||    
T  47903591 atcgaatcgaaaaatagtattcttgagctatgtaatttggctag---------------tattcattattcttgtggtttgggttgttttggttcggttg 47903675  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaac 227  Q
    ||||||||||||||||||| |||| |||||    
T  47903676 ctgagatgcaaaccgcaaaccgaaacgaac 47903705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 83 - 227
Target Start/End: Complemental strand, 18672961 - 18672817
Alignment:
Q  83 tgcaacaatgaaaaaattgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggctt 182  Q
    |||||||||  ||||||  |||||||||||||||||| || |||||||||||| |||||||||  ||||||||||||| |||||| ||||||||||| ||    
T  18672961 tgcaacaatagaaaaatctaatcaaaagagattattcctgtgctatgtaattgggctagtacaagtttaagtaatattgattattattgcggtttggttt 18672862  T
Q  183 ggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaac 227  Q
    |||||||||| |||||||||||||||||| |||| ||||||||||    
T  18672861 ggtttggttcggttgctgagatgcaaaccacaaaccgaaccgaac 18672817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 102 - 228
Target Start/End: Original strand, 5932980 - 5933100
Alignment:
Q  102 aatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttgctga 201  Q
    |||| ||||||||||||||||||||||||||||| |||||||||| |||||||      |||||||||| || ||||| |||||||||||| ||||||||    
T  5932980 aatcgaaagagattattcttgagctatgtaattgggctagtacatgtttaagt------cattattcttacgatttggtttggtttggttcggttgctga 5933073  T
Q  202 gatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||| ||||||||||| |||||||||||    
T  5933074 gatacaaaccgcaaaccgaaccgaacc 5933100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 31982473 - 31982299
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctga---tgcaacaatgaaaaa 97  Q
    ||||||||||| ||| |||||||||||||||||||||| ||||||              ||||||||||||||||||  |||   |||||||||| ||||    
T  31982473 caaattattgggaagaaaaggaaacaaattcatcactgaaaatga--------------aaaggaattagaatcgaatttgatggtgcaacaatggaaaa 31982388  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtt 186  Q
    ||  ||||||||||||||||||||| |||||||||||| ||| ||||| |||||||||||||| |||||| ||||||||||| ||||||    
T  31982387 atcaaatcaaaagagattattcttgggctatgtaattgggctggtacaaatttaagtaatattgattatttttgcggtttggtttggtt 31982299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 3211866 - 3211802
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  3211866 tatttttgcggtttggtttggtttggttcggttgctgagatgcaaaccgcaaaccgaaccgaacc 3211802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 10672178 - 10672242
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  10672178 tatttttgcggtttggtttggtttggttcggttgctgagatgcaaaccgcaaaccgaaccgaacc 10672242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 47070027 - 47070091
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  47070027 tatttttgcggtttggtttggtttggttcggttgctgagatgcaaaccgcaaaccgaaccgaacc 47070091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 47204181 - 47204117
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  47204181 tatttttgcggtttggtttggtttggttcggttgctgagatgcaaaccgcaaaccgaaccgaacc 47204117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 36508947 - 36509024
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaac 78  Q
    |||||||||||  || |||||||||||||||||||| | |||| ||||||| ||||||||||| || |||||||||||    
T  36508947 caaattattggggagaaaaggaaacaaattcatcaccgaaaattaattgaaggagatggaaagcaaatagaatcgaac 36509024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 36509024 - 36509084
Alignment:
Q  119 cttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttgg 179  Q
    |||| |||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||||    
T  36509024 cttgggctatgtaattgggctcgtacaaatttaagtaatattgattattcttgcggtttgg 36509084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 5932902 - 5932948
Alignment:
Q  2 aaattattggaaagtaaaggaaacaaattcatcactggaaatgaatt 48  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||    
T  5932902 aaattattagaaagtaaaggaaacaaattcatcactgaaaatgaatt 5932948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 18673020 - 18672962
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatgg 59  Q
    ||||||||| | ||| ||||||||||||||||||| ||||||||||||||| |||||||    
T  18673020 caaattatttggaagaaaaggaaacaaattcatcaatggaaatgaattgaaggagatgg 18672962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 11206083 - 11206038
Alignment:
Q  183 ggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||    
T  11206083 ggtttggttcggttgctgagatgcaaaccgcaaaccgaaccgaacc 11206038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 12117959 - 12118023
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||| | |||||||||||  |||||||||||||||| |||||| |||||||||||    
T  12117959 tatttttgcggtttagtttggtttggtttggttgctgagatgcaaatcgcaaaccgaaccgaacc 12118023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 8768373 - 8768326
Alignment:
Q  181 ttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||||||||||| |||||||||||||||||| |||| |||||||||||    
T  8768373 ttggtttggttcggttgctgagatgcaaaccacaaaccgaaccgaacc 8768326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 179; Significance: 9e-97; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 13801802 - 13801578
Alignment:
Q  2 aaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaaa 98  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||   |||||||| |||||    
T  13801802 aaattattgggaagtaaaggaaacaaattcatcagtggaaatgaattgaaagagatgaaaaggaattagaatcgaacctgatggtgcaacaatggaaaaa 13801703  T
Q  99 ttgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttgc 198  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  13801702 ttgaatcaaaagagattattcttgagctatgtaattgggctagtacatatttaagtaatattcattattcttgcggtttggtttggtttggttcagttga 13801603  T
Q  199 tgagatgcaaaccgcaaatcgaacc 223  Q
    |||||||||||||||||| ||||||    
T  13801602 tgagatgcaaaccgcaaaccgaacc 13801578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 33550580 - 33550810
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| ||| ||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||   |||||||| ||||    
T  33550580 caaattattgggaagaaaaggaaacaaattcatcactagaaatgaattaaaagagatcgaaaggaattagaatcgaacctgatggtgcaacaatggaaaa 33550679  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || |||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||| ||||| ||||    
T  33550680 atcgaatcaaaagagattattcttgggctatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttggtttggttcggttcggttg 33550779  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||||||||||||||||||| |||||| ||||    
T  33550780 ctgagatgcaaaccgcaaaccgaaccaaacc 33550810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 35039764 - 35039534
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||  |||||   |||||||| ||||    
T  35039764 caaattattgggaagaaaaggaaacaaattcatcactggaaatgaattaaaagagatggaaaggaattagaattgaatttgatggtgcaacaatggaaaa 35039665  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || |||||||||||||||||||||| |||||||||||| |||||||||| ||||||||| |||||||||||||||||||||| |||||||||||  ||||    
T  35039664 atcgaatcaaaagagattattcttgggctatgtaattgggctagtacatgtttaagtaacattcattattcttgcggtttggtttggtttggtttggttg 35039565  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
     |||||||||||||||||| |||||| ||||    
T  35039564 ttgagatgcaaaccgcaaaccgaaccaaacc 35039534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 25137401 - 25137618
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||   ||| | |||||||    
T  25137401 caaattattggaaagaaaaggaaacaaattcatcactggaaatgaattgaaagagaaggaaatgaattagaattgaacctgatggtgcaatattgaaaaa 25137500  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || |||||||||||||||||||||| |||||||||||| | |||||||| |||||||||||||||||||| ||| ||||||| |  ||||||||| ||||    
T  25137501 atcgaatcaaaagagattattcttgggctatgtaattgggatagtacatgtttaagtaatattcattattattgtggtttggttcagtttggttcggttg 25137600  T
Q  198 ctgagatgcaaaccgcaa 215  Q
     ||||||||| |||||||    
T  25137601 atgagatgcataccgcaa 25137618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 15859985 - 15860202
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||  |||||||||||||||||||||||||  |||||||||||||||||| |||| |||||||||||| | ||||||   |||||||| ||||    
T  15859985 caaattattgagaagtaaaggaaacaaattcatcactaaaaatgaattgaaagagatagaaaagaattagaatcggaactgatggtgcaacaatggaaaa 15860084  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
      | |||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||| |||||| |||||||||||| ||||    
T  15860085 tct-aatcaaaagagattattcttgagctatgtaattgggctagtacatgtttaattaatattcattattcttgcagtttggtttggtttggttcggttg 15860183  T
Q  198 ctgagatgcaaaccgcaaa 216  Q
     |||| ||||||| |||||    
T  15860184 gtgaggtgcaaactgcaaa 15860202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 48 - 228
Target Start/End: Original strand, 10591142 - 10591325
Alignment:
Q  48 tgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaaattgaatcaaaagagattattcttgagctatgtaattgagctagtac 144  Q
    ||||||||||||||| |||||||||||||||||||||   ||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||| |||    
T  10591142 tgaaagagatggaaatgaattagaatcgaacctgatggtacaacaatgaaaaaatcgaatcgaaagacattattcttgagctatgtaattgggctattac 10591241  T
Q  145 atatttaagtaatattcattattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    || |||||||||||||||||||||||||||||  | |||||||||||| |||| ||||| |||||||||||| |||| ||||||    
T  10591242 atgtttaagtaatattcattattcttgcggttcagtttggtttggttctgttgttgagacgcaaaccgcaaaccgaatcgaacc 10591325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 10390852 - 10390636
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctga---tgcaacaatgaaaaa 97  Q
    ||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||   |||||||||| ||||    
T  10390852 caaattattgagaaataaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattaaaatcgaatctgatggtgcaacaatggaaaa 10390753  T
Q  98 attgaatcaaaagagattattc-ttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagtt 196  Q
    |||||||| ||| ||||||||| |||||||| ||||||  ||               || ||||||||||||||||||||||| |||||||||||| |||    
T  10390752 attgaatcgaaaaagattattctttgagctacgtaatttggc---------------tactattcattattcttgcggtttggtttggtttggttcggtt 10390668  T
Q  197 gctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||||||||||||||||||||||||||||||||    
T  10390667 gctgagatgcaaaccgcaaatcgaaccgaacc 10390636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 5866742 - 5866678
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  5866742 tatttttgcggtttggtttggtttggttcggttgctgagatgcaaaccgcaaaccgaaccgaacc 5866678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 12270905 - 12270969
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  12270905 tatttttgcggtttggtttggtttggttcggttgctgagatgcaaaccgcaaaccgaaccgaacc 12270969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 10494078 - 10493988
Alignment:
Q  137 gctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaac 227  Q
    |||||||||  ||||||||| |   ||||||||||| |||||| ||||||||||| |||||||||||||||||| ||||| |||| |||||    
T  10494078 gctagtacaagtttaagtaacaacgattattcttgcagtttggtttggtttggtttagttgctgagatgcaaactgcaaaccgaatcgaac 10493988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 10494262 - 10494223
Alignment:
Q  22 aaacaaattcatcactggaaatgaattgaaagagatggaa 61  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  10494262 aaacaaattcatcactgaaaatgaattgaaggagatggaa 10494223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 33474698 - 33474928
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  33474698 caaattattgggatgtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatgacgcaacaatgaaaaa 33474797  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    ||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||| |||||||||||| ||||    
T  33474798 atcaaatcaaaagagattattcttgagctatgtaattgggctagtacatatttaagtaatattcgttattcttgcagtttggtttggtttggttcggttg 33474897  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
     ||||||||||| | |||| |||||||||||    
T  33474898 atgagatgcaaatcacaaaccgaaccgaacc 33474928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 39256461 - 39256231
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||| ||||    
T  39256461 caaattattgggaaataaaggaaacaaattcatcattggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatggtgcaacaatggaaaa 39256362  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || ||||| ||| ||||||||| ||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  39256361 atcgaatcgaaaaagattattcgtgagctatgtaatttggctagtacatgtttaagtaatattcattattcttgcggtttggtttggtttggttcggttg 39256262  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||||||||||||||||||| |||||| ||||    
T  39256261 ctgagatgcaaaccgcaaaccgaaccaaacc 39256231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 33910602 - 33910372
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||   ||||| || ||||    
T  33910602 caaattattgggaagtaaaggaaacaaattcatcacttgaaatgaattgaaagagatggaaaagaattagaatcgaacctgatggtgcaacattggaaaa 33910503  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || ||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||   ||     
T  33910502 atcgaatcaaaagagattattcttaagttatgtaattgggctagtacatatttaagtaatattcattattcttgcggtttggtttggtttggtttgatta 33910403  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||||||||||||||||||| | |||||||||    
T  33910402 ctgagatgcaaaccgcaaaccaaaccgaacc 33910372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 24910879 - 24910650
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||   |||||||  ||||    
T  24910879 caaattattgggaagtaaaggaaacaaattcatcactcgaaatgaattgagagagatggaaagaaattagaatcgaacctgatggtgcaacaattgaaaa 24910780  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || ||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||| |||||||||||| ||||    
T  24910779 atcgaatcgaaagagattattcttgagctatgtaattgggctagtacatgtttaagtaatattcattattcttccggtttggtttggtttggttcggttg 24910680  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaac 227  Q
    |||||||||||||| ||||  |||||||||    
T  24910679 ctgagatgcaaaccacaaactgaaccgaac 24910650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 16529317 - 16529101
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||| | ||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  16529317 caaattatttggaagaaaaggaaacaaattgatccctggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatggtgcaacaatgaaaaa 16529218  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
     | |||||||||||||||||||||| |||||||||||| |||| ||||| ||||||||||||||| |||||||||||||||| |||||||||||  ||||    
T  16529217 ttcgaatcaaaagagattattcttgggctatgtaattgggctattacatgtttaagtaatattcactattcttgcggtttggtttggtttggtttggttg 16529118  T
Q  198 ctgagatgcaaaccgca 214  Q
    |||||||||||||||||    
T  16529117 ctgagatgcaaaccgca 16529101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 45692053 - 45692278
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||| | |||||||||| | ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||   |||||||||||||    
T  45692053 caaattattaggaagtaaaggatataaattcatctctgtaaatgaattgaaagagatggaaaggaattagaatcgaacctaatggtgcaacaatgaaaaa 45692152  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    ||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||| ||||||||||||||     ||| |||||||| ||||    
T  45692153 attgaatcaaaagagattattcttgagttatgtaattggactagtacatatttaagtaatatttattattcttgcggt-----ttgttttggttcggttg 45692247  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||||||||||||||||||| |||||||||||    
T  45692248 ctgagatgcaaaccgcaaaccgaaccgaacc 45692278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 32954348 - 32954561
Alignment:
Q  13 aagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaaattgaatcaaaa 109  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||| ||||||||||   |||||||| |||||| ||||| |||    
T  32954348 aagtaaaggaaacaaattcatcactgaaaatgaattgaaagagttggaaagtaattagaattgaacctgatggtgcaacaatggaaaaatcgaatcgaaa 32954447  T
Q  110 gagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttgctgagatgcaaa 209  Q
    || ||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||     | ||| |||||||||||| ||||||||||||||||    
T  32954448 gaaattattcttgagctatgtaattgggcttgtacatgtttaagtaatattcattattct-----tatggtttggtttggttcggttgctgagatgcaaa 32954542  T
Q  210 ccgcaaatcgaaccgaacc 228  Q
    |||| || ||||| |||||    
T  32954543 ccgcgaaccgaacggaacc 32954561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 44918798 - 44918975
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgat---gcaacaatgaaaaa 97  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||| ||||   ||||||||| ||||    
T  44918798 caaattattgggaagtaaaggaaacaaattaatcactggaaatgaatcgaaagagatggaaaagaattagaatcgaacttgatggagcaacaatggaaaa 44918897  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggt 175  Q
    ||  |||||||| |||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||    
T  44918898 atcaaatcaaaaaagattattcttgagctatgtaattggactagtacatgtttaagtaatattcattattcttgcggt 44918975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 1160843 - 1160631
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctga---tgcaacaatgaaaaa 97  Q
    ||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||   |||||||||| ||||    
T  1160843 caaattattgggaaataaaggaaacaaaatcatcactggaaatgaattgaaagagatggaaaggaattagaatcgtacctgatgttgcaacaatggaaaa 1160744  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    |||||||| ||| ||||||||||||||||||||||||  |||||               ||||||||||||||||||||||| |||||||||||| ||||    
T  1160743 attgaatcgaaaaagattattcttgagctatgtaatttggctag---------------tattcattattcttgcggtttggtttggtttggttcggttg 1160659  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaa 226  Q
    ||||||||| |||||||||||||||||||    
T  1160658 ctgagatgc-aaccgcaaatcgaaccgaa 1160631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 83 - 223
Target Start/End: Original strand, 11899381 - 11899521
Alignment:
Q  83 tgcaacaatgaaaaaattgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggctt 182  Q
    |||||||||| ||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  11899381 tgcaacaatggaaaaatcaaatcaaaaaagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggttt 11899480  T
Q  183 ggtttggttcagttgctgagatgcaaaccgcaaatcgaacc 223  Q
    |||||| ||| ||||||||||||||||||||||||| ||||    
T  11899481 ggtttgattcggttgctgagatgcaaaccgcaaatcaaacc 11899521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 51252246 - 51252058
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| ||| ||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||  |||||   |||||||| ||||    
T  51252246 caaattattgggaagaaaatgaaacaaatttataactggaaatgaattgaaagagatggaaaggaattagaatcgaatttgatggtgcaacaatggaaaa 51252147  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtt 186  Q
    || |||||||||||||||||| ||  |||||||||||  |||||||||| ||||||||||||||||||||||||||| |||| ||||||    
T  51252146 atcgaatcaaaagagattattatttggctatgtaattaggctagtacatgtttaagtaatattcattattcttgcgggttggtttggtt 51252058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 29389289 - 29389440
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctga---tgcaacaatgaaaaa 97  Q
    ||||||||||| ||||||| ||||||| |||||| |||||||||| |||||||||||||| |||||||||||||||||||||   |||||||||| ||||    
T  29389289 caaattattgggaagtaaaagaaacaagttcatccctggaaatgagttgaaagagatggagaggaattagaatcgaacctgatggtgcaacaatggaaaa 29389388  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatt 149  Q
    || |||| ||||||||||||||||||| | ||||||| || || ||||||||    
T  29389389 atcgaattaaaagagattattcttgagttgtgtaattcagataatacatatt 29389440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 111 - 228
Target Start/End: Complemental strand, 6722529 - 6722418
Alignment:
Q  111 agattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttgctgagatgcaaac 210  Q
    ||||||||||||||||||||||||| |  ||||||| ||||||||||||||||||| ||||||||||||     |||||||| |||||||||||||||||    
T  6722529 agattattcttgagctatgtaattgggtcagtacatgtttaagtaatattcattat-cttgcggtttgg-----tttggttcggttgctgagatgcaaac 6722436  T
Q  211 cgcaaatcgaaccgaacc 228  Q
    ||||||||||| ||||||    
T  6722435 cgcaaatcgaatcgaacc 6722418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 5155057 - 5154993
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  5155057 tatttttgcggtttggtttggtttggttcggttgctgagatgcaaaccgcaaaccgaaccgaacc 5154993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 8211639 - 8211703
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  8211639 tatttttgcggtttggtttggtttggttcggttgctgagatgcaaaccgcaaaccgaaccgaacc 8211703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 20494094 - 20494158
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||    
T  20494094 tatttttgcggtttggtttggtttggttcggttgctgagatgcaaacagcaaatcgaaccgaacc 20494158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 29707801 - 29707741
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccg 224  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||    
T  29707801 tatttttgcggtttggtttggtttggttcggttgctgagatgcaaaccgcaaaccgaaccg 29707741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 11899272 - 11899301
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaatt 30  Q
    ||||||||||||||||||||||||||||||    
T  11899272 caaattattggaaagtaaaggaaacaaatt 11899301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 2226709 - 2226479
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||   |||||||| ||||    
T  2226709 caaattattgggaagtaaaggaaacatattcatcacaggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatggtgcaacaatggaaaa 2226610  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || ||||||||||||||||||| ||||||||||||||| |||| ||||| |||||||||||||||||||||| ||||||||| |||||||||||| ||||    
T  2226609 atcgaatcaaaagagattattcatgagctatgtaattgggctaatacatgtttaagtaatattcattattctggcggtttggtttggtttggttcggttg 2226510  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||||||||||||||||||| ||||| |||||    
T  2226509 ctgagatgcaaaccgcaaaccgaactgaacc 2226479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 12680901 - 12680683
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||   |||||||| ||||    
T  12680901 caaattattgaaaagtaaaggaaacaaattcatcacttgaaatgaattgaaagagatggaaaggaattagaatcgaacctgatggtgcaacaatggaaaa 12680802  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || |||||||||||||||||| || || |||||||||| |||||||||| |||||||||||||||| ||||||||||||||| |||||||||||| ||||    
T  12680801 atcgaatcaaaagagattatttttaagttatgtaattgggctagtacatgtttaagtaatattcatcattcttgcggtttggtttggtttggttcggttg 12680702  T
Q  198 ctgagatgcaaaccgcaaa 216  Q
    |||||||||||||||||||    
T  12680701 ctgagatgcaaaccgcaaa 12680683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 12165769 - 12165539
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||  ||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||| ||| ||||||||||   |||||||| |||     
T  12165769 caaattattgacaagtaaaggaaacaaattcatcactggaaataaatcgaaagagatgaaaaggaattaaaattgaacctgatggtgcaacaatggaaag 12165670  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || ||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||    
T  12165669 atcgaatcgaaagagattattcttgagctatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttggtttcgtttggttcagttg 12165570  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||||||||||||| ||||| |||||||||||    
T  12165569 ctgagatgcaaactgcaaaccgaaccgaacc 12165539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 36103437 - 36103225
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||   |||||||| ||||    
T  36103437 caaattattggaaagtaaatgaaacaaattcatcactgtaaatgaattgaaagagatggaaaggaattagaatcgaacttgatggtgcaacaatggaaaa 36103338  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || |||||||||  |||||||||||||||||||| ||| |||||||||| || ||||||||||||||||||||||||||||| |||||||||||| ||||    
T  36103337 atcgaatcaaaaacgattattcttgagctatgtagttgggctagtacatgttcaagtaatattcattattcttgcggtttggtttggtttggttcggttg 36103238  T
Q  198 ctgagatgcaaac 210  Q
    |||||||||||||    
T  36103237 ctgagatgcaaac 36103225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 9161239 - 9161467
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||   |||||||| ||||    
T  9161239 caaattattgggaagtaaaggaaataaattcatcactggaaatgaattcaaagagatggaaaggaattagaattgaacttgatggtgcaacaatggaaaa 9161338  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || ||||||||||||||||||  ||||||||||  ||| |||||| ||||||||||||||||||||||||||||||||| || |||||||||||| ||||    
T  9161339 atcgaatcaaaagagattatttctgagctatgt--ttgggctagtgcatatttaagtaatattcattattcttgcggttgggtttggtttggttcggttg 9161436  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||||||| ||||||||||| |||||||||||    
T  9161437 ctgagattcaaaccgcaaaccgaaccgaacc 9161467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 30265618 - 30265393
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||   |||||||| ||||    
T  30265618 caaattattgggaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaataattagaatcgaacttgatggtgcaacaatggaaaa 30265519  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || ||||  |||| | ||||| |||||||||||||||| ||||| ||||  ||||||||||||||||||||||||| ||||| ||| |||||||| ||||    
T  30265518 atcgaattgaaagcg-ttatttttgagctatgtaattgggctagcacatgattaagtaatattcattattcttgcgatttggtttgatttggttcggttg 30265420  T
Q  198 ctgagatgcaaaccgcaaatcgaaccg 224  Q
    ||||||||||||||||||| |||||||    
T  30265419 ctgagatgcaaaccgcaaaccgaaccg 30265393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 32521046 - 32520821
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||   |||||||||||||    
T  32521046 caaattattgggaagtaaaagaaacaaattcatcacttgaaatgaattgaaagagatggaaatgaactagaatcgaacctgatggtgcaacaatgaaaaa 32520947  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || ||||||||||||||||||||| |  |||||||||| |||||||||| |||||||||||||||| |||||||||||     |||||||||||| ||||    
T  32520946 atcgaatcaaaagagattattcttaaattatgtaattgggctagtacatctttaagtaatattcatcattcttgcggt-----ttggtttggttcggttg 32520852  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||||||||| | |||||| | |||||||||    
T  32520851 ctgagatgcagatcgcaaaccaaaccgaacc 32520821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 333109 - 332878
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| ||||||| |||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||   |||  ||| ||||    
T  333109 caaattattgggaagtaaaagaaataaattcatcacgggaaatgaattgaaagagatagaaaggaattagaatcgaacttgatggtgcaattatggaaaa 333010  T
Q  98 attgaatcaaaagagattattcttgagctat--gtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagt 195  Q
    || ||||||||| ||||||||||||||||||  ||||||| || ||||||| |||||||||||||||||||||||||||||| | |||||||||||| |     
T  333009 atcgaatcaaaatagattattcttgagctatatgtaattgggccagtacatgtttaagtaatattcattattcttgcggtttagtttggtttggttcgga 332910  T
Q  196 tgctgagatgcaaaccgcaaatcgaaccgaac 227  Q
    ||||||||||||||||||||| | ||||||||    
T  332909 tgctgagatgcaaaccgcaaaccaaaccgaac 332878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 38433942 - 38434172
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| ||| |||| ||| |||||||||| |||||||||||| || |||||| ||| ||||||||||||||| |||||   |||||||| ||||    
T  38433942 caaattattgggaagaaaagaaaataaattcatcattggaaatgaattaaaggagatgaaaaagaattagaatcgaacgtgatggtgcaacaatggaaaa 38434041  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || |||| ||||||||||||||||  |||||||||||| |||||||||  |||||||||||||  ||||||||||||||||| |||||||||||| ||||    
T  38434042 atcgaattaaaagagattattcttaggctatgtaattgggctagtacaagtttaagtaatatttcttattcttgcggtttggtttggtttggttcggttg 38434141  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||||||| ||||||||||||| |||||||||    
T  38434142 ctgagatacaaaccgcaaatcaaaccgaacc 38434172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 35893242 - 35893405
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaa-ggaattagaatcgaacctgatg---caacaatgaaaa 96  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| | |||||   ||||||||||||    
T  35893242 caaattattgggaagtaaaggaaacaaattcatcactggaaatgaattgaaaaagatggaaaaggaattagaatcgagcgtgatggtgcaacaatgaaaa 35893341  T
Q  97 aattgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatatt 160  Q
    |||  |||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  35893342 aatcaaatcgaaagagattattcttgagctatgtaattgggctagtacatgtttaagtaatatt 35893405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10174329 - 10174536
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||| |||||||||||||||||||||||||||          ||||||||||| ||| |||||| ||||||||||||||   |||||||||||||    
T  10174329 caaattattagaaagtaaaggaaacaaattcatcact----------tgaaagagatgaaaatgaattataatcgaacctgatggtgcaacaatgaaaaa 10174418  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || |||||||||||||||   |||||| |||||||||| | |||||||| |||||||||||||||||    ||||||||||| |||||||||||| ||||    
T  10174419 atcgaatcaaaagagatt---cttgagttatgtaattgggatagtacatgtttaagtaatattcatt----ttgcggtttggtttggtttggttcggttg 10174511  T
Q  198 ctgagatgcaaaccgcaaatcgaac 222  Q
    |||||||||||||||||||||||||    
T  10174512 ctgagatgcaaaccgcaaatcgaac 10174536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 36176924 - 36176728
Alignment:
Q  3 aattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatgcaacaatgaaaaaattga 102  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||               ||     
T  36176924 aattattggaaagtaaaggaaacaaattcatcattggaaatgaatcgaaagagatggaaaggaattagaattgaacctgatgg--------------tg- 36176840  T
Q  103 atcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttgctgag 202  Q
      ||| || |||| ||||||||||||||||||| |||||||||  ||||||||||| |||||||||||||||||||| ||| |||||||| |||||||||    
T  36176839 --caacagtgatttttcttgagctatgtaattgggctagtacacgtttaagtaatagtcattattcttgcggtttggtttgatttggttcggttgctgag 36176742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 2 - 172
Target Start/End: Original strand, 42544911 - 42545086
Alignment:
Q  2 aaattattggaaagtaaaggaaacaaattcatcactggaaatgaat--tgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaa 96  Q
    |||||||||  |||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||| |||| | ||| |||   |||||||||| |    
T  42544911 aaattattgagaagtaaaggaaacaaattcatcactggaaatgaatattgaaagagatggaaaagaattaaaatcaagccttatggtgcaacaatgaaca 42545010  T
Q  97 aattgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgc 172  Q
    | ||||||||||  |||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||    
T  42545011 agttgaatcaaattagattattcttgagctatgttattgggctattacatatttaagtaatattcattattcttgc 42545086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 23780990 - 23781182
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| ||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||| ||||   |||||||| ||||    
T  23780990 caaattattgggaagtaaaggaaacaaattca-----ggaaatgaattgaaagagatggaaaggaattagaatcgaacccgatggtacaacaatggaaaa 23781084  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    ||  |||||||||||||||||||||||||| |||||||                 | ||||||||||||| ||||||||||| |||| ||||||||||||    
T  23781085 atcaaatcaaaagagattattcttgagctaagtaattg-----------------ggaatattcattatttttgcggtttggtttggcttggttcagttg 23781167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 23867943 - 23868135
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| ||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||| ||||   |||||||| ||||    
T  23867943 caaattattgggaagtaaaggaaacaaattca-----ggaaatgaattgaaagagatggaaaggaattagaatcgaacccgatggtacaacaatggaaaa 23868037  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    ||  |||||||||||||||||||||||||| |||||||                 | ||||||||||||| ||||||||||| |||| ||||||||||||    
T  23868038 atcaaatcaaaagagattattcttgagctaagtaattg-----------------ggaatattcattatttttgcggtttggtttggcttggttcagttg 23868120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 101 - 216
Target Start/End: Complemental strand, 36176612 - 36176497
Alignment:
Q  101 gaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttgctg 200  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||  ||||||||||| |||||||||||||||||||| ||| |||||||| |||||||    
T  36176612 gaatcaaaagagatttttcttgagctatgtaattgggctagtacacgtttaagtaatagtcattattcttgcggtttggtttgatttggttcggttgctg 36176513  T
Q  201 agatgcaaaccgcaaa 216  Q
    ||||||||||||||||    
T  36176512 agatgcaaaccgcaaa 36176497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 9988715 - 9988586
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctga---tgcaacaatgaaaaa 97  Q
    ||||||||| ||||| ||||||||||||||||||||| ||||||||||||| |||||| |||||||||| ||||||| ||||   ||||| |||||||||    
T  9988715 caaattatttgaaagaaaaggaaacaaattcatcactagaaatgaattgaaggagatgaaaaggaattaaaatcgaatctgatggtgcaagaatgaaaaa 9988616  T
Q  98 attgaatcaaaagagattattcttgagcta 127  Q
    |||||||||||||||||| |||||| ||||    
T  9988615 attgaatcaaaagagattgttcttgggcta 9988586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 38334790 - 38334707
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg 84  Q
    ||||||||||| ||| ||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38334790 caaattattgggaagaaaatgaaacaaattcatcattggaaatgaattgaaggagatggaaaggaattagaatcgaacctgatg 38334707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 179
Target Start/End: Complemental strand, 17084700 - 17084520
Alignment:
Q  2 aaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaaa 98  Q
    ||||||||||  || |||||||||||||||||||||| ||||  |||||| |||||| |||  || |||| |||||| |||||   ||| |||| |||||    
T  17084700 aaattattggggagaaaaggaaacaaattcatcactgaaaattgattgaaggagatgaaaaacaaatagattcgaacttgatggtgcaataatggaaaaa 17084601  T
Q  99 ttgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttgg 179  Q
    | ||||||||| |||||||| |||   |||||||||| | |||||||  ||||||||||||| ||||||||||||||||||    
T  17084600 tcgaatcaaaatagattatttttggattatgtaattgggttagtacaagtttaagtaatattgattattcttgcggtttgg 17084520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 666992 - 666928
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  666992 tatttttgcggtttggtttggtttggttcggttgctgagatgcaaaccgcaaaccgaaccgaacc 666928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 701566 - 701630
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  701566 tatttttgcggtttggtttggtttggttcggttgctgagatgcaaaccgcaaaccgaaccgaacc 701630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 8409335 - 8409399
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  8409335 tatttttgcggtttggtttggtttggttcggttgctgagatgcaaaccgcaaaccgaaccgaacc 8409399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 11917804 - 11917868
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  11917804 tatttttgcggtttggtttggtttggttcggttgctgagatgcaaaccgcaaaccgaaccgaacc 11917868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 27885807 - 27885743
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  27885807 tatttttgcggtttggtttggtttggttcggttgctgagatgcaaaccgcaaaccgaaccgaacc 27885743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 30002347 - 30002411
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| |||||||||||| |||||||||||| |||||||||| |||||||||||    
T  30002347 tatttttgcggtttggtttggtttggttcggttgctgagatgtaaaccgcaaaccgaaccgaacc 30002411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 38334475 - 38334411
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| || ||||||||| ||||||||||||||||||||||| |||||||||||    
T  38334475 tatttttgcggtttggtttagtttggttcggttgctgagatgcaaaccgcaaaccgaaccgaacc 38334411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 15068825 - 15068889
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| |||||||||||  |||| |||||||||||||||||| |||||||||||    
T  15068825 tatttttgcggtttggtttggtttggtttggttgttgagatgcaaaccgcaaaccgaaccgaacc 15068889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 42545822 - 42545868
Alignment:
Q  182 tggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||||||||||| |||| |||||||||||||||||| |||||||||||    
T  42545822 tggtttggttcggttgttgagatgcaaaccgcaaaccgaaccgaacc 42545868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 25298082 - 25297852
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||   |||||||| ||||    
T  25298082 caaattattgggaagtaaatgaaacaaattcatcactggaaataaattgaaagagatggaaagaaattagaatcgaacctgatggtgcaacaatggaaaa 25297983  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || |||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  25297982 atcgaatcaaaagcgattattcttgagctatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttggtttggtttggttcggttg 25297883  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||||||||||||| |||| | |||||||||    
T  25297882 ctgagatgcaaaccacaaaccaaaccgaacc 25297852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 44035578 - 44035796
Alignment:
Q  13 aagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgat---gcaacaatgaaaaaattgaatcaaaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   |||||||||||||||| |||||||||    
T  44035578 aagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacttgatcgtgcaacaatgaaaaaatcgaatcaaaa 44035677  T
Q  110 gagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttgctgagatgcaaa 209  Q
    ||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||    
T  44035678 gagattattcttgagttatgtaactgagctagtacatgtttaagtaatattcattatttttgcggtttggtttggtttggttcggttgctgagatgcaaa 44035777  T
Q  210 ccgcaaatcgaaccgaacc 228  Q
    ||| ||| | |||||||||    
T  44035778 ccgtaaaccaaaccgaacc 44035796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 11376143 - 11376368
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctga---tgcaacaatgaaaaa 97  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||| ||||    
T  11376143 caaattattgggaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatggtgcaacaatggaaaa 11376242  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || |||||||||| ||||||||||| |||||| |||||||||||||||| ||||||||||||||| ||||||||||||     |||||||||||||||||    
T  11376243 atcgaatcaaaagcgattattcttgggctatgcaattgagctagtacatgtttaagtaatattcagtattcttgcggt-----ttggtttggttcagttg 11376337  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||||||||||||| ||||| |||||||||||    
T  11376338 ctgagatgcaaactgcaaaccgaaccgaacc 11376368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 17916686 - 17916454
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacct-----gatgcaacaatgaaa 95  Q
    ||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     | ||||| |||| ||    
T  17916686 caaattatttggaagtaaagaaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattataatcgaacctctgatggtgcaataatggaa 17916587  T
Q  96 aaattgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagt 195  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||| || ||    
T  17916586 aaaatgaatcaaaagagattattcttgagctatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttggtttggtttggctcggt 17916487  T
Q  196 tgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||||||||||||||| |||| | |||||||||    
T  17916486 tgctgagatgcaaaccacaaaccaaaccgaacc 17916454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 44979601 - 44979383
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||   |||||||| ||||    
T  44979601 caaattattggaaagaaaaggaaacaaattcatcactggaaatgaattaaaagagatggaaaggaattagaattgaacctcatggtgcaacaatggaaaa 44979502  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || ||||||||||||||||||| || |||||||||||| |||||||||| ||||||||| |||||||||||||||||||||| |||||||||||| || |    
T  44979501 atcgaatcaaaagagattattcctgggctatgtaattgggctagtacatgtttaagtaacattcattattcttgcggtttggtttggtttggttcggtag 44979402  T
Q  198 ctgagatgcaaaccgcaaa 216  Q
    |||||||||||||||||||    
T  44979401 ctgagatgcaaaccgcaaa 44979383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 19936946 - 19936721
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||| |||||   |||||||||||||    
T  19936946 caaattattgggaagtaaaggaaacaaattcagcactggaaatgaattgaatgagatggaaagaaattagaatcgaacatgatggtgcaacaatgaaaaa 19936847  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || ||||||||| | ||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||| ||||||||     ||||    
T  19936846 atcgaatcaaaatatattattcttgagctatgtatttgagctagtacatgtataagtaatattcattattcttgcggtttggtttggtttg-----gttg 19936752  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||||||| ||||| ||||| |||||||||||    
T  19936751 ctgagatacaaactgcaaaccgaaccgaacc 19936721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 34910565 - 34910791
Alignment:
Q  1 caaattattgg-aaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaa 96  Q
    ||||||||||| |||| |||||||||||||||||||| | ||||||||||| ||| ||| ||| ||||||||||||||| |||||   |||||||| |||    
T  34910565 caaattattgggaaagaaaaggaaacaaattcatcacagaaaatgaattgagagaaatgaaaacgaattagaatcgaacttgatggtgcaacaatggaaa 34910664  T
Q  97 aattgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagtt 196  Q
    ||| ||||||||||| |||||||||| |||||||||||| | |||||||| ||||||||||||||||||||||||||||     |||||||| ||| |||    
T  34910665 aatcgaatcaaaagatattattcttgggctatgtaattgggttagtacatgtttaagtaatattcattattcttgcggt-----ttggtttgtttcggtt 34910759  T
Q  197 gctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||| |||| ||||||| ||| | |||||||||    
T  34910760 gctcagattcaaaccgtaaaccaaaccgaacc 34910791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 59 - 228
Target Start/End: Original strand, 18360115 - 18360287
Alignment:
Q  59 gaaaggaattagaatcgaacctgatg---caacaatgaaaaaattgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagta 155  Q
    ||||| |||||||||||||| |||||   |||||||| |||||| |||||||||||||||||| | | |||||||||||| |||||||||  ||||||||    
T  18360115 gaaagaaattagaatcgaacatgatggtgcaacaatggaaaaatcgaatcaaaagagattattttcgggctatgtaattgggctagtacaagtttaagta 18360214  T
Q  156 atattcattattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||||| |||||||||||||||||| |||||||||||| ||||||||||||||||| | ||| | |||||||||    
T  18360215 atattgattattcttgcggtttggtttggtttggttcggttgctgagatgcaaactgtaaaccaaaccgaacc 18360287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 20420456 - 20420572
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacc---tgatgcaacaatgaaaaa 97  Q
    ||||||||||| ||| ||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||   ||||||||||||| ||||    
T  20420456 caaattattgggaagaaaatgaaacaaattcatcattggaaatgaattgaaggagatggaaaggaattagaatcaaacctgatgatgcaacaatggaaaa 20420555  T
Q  98 attgaatcaaaagagat 114  Q
    || |||| ||| |||||    
T  20420556 atcgaattaaaggagat 20420572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 9811739 - 9811803
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  9811739 tatttttgcggtttggtttggtttggttcggttgctgagatgcaaaccgcaaaccgaaccgaacc 9811803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 20420777 - 20420841
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| ||||||||||||  |||||||||||||||||||||| |||||||||||    
T  20420777 tatttttgcggtttggtttggtttggttcgattgctgagatgcaaaccgcaaaccgaaccgaacc 20420841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 36413021 - 36412957
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| ||||||||||||  |||||||||||||||||||||| |||||||||||    
T  36413021 tatttttgcggtttggtttggtttggttcgattgctgagatgcaaaccgcaaaccgaaccgaacc 36412957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 16579006 - 16579053
Alignment:
Q  181 ttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  16579006 ttggtttggttcagttgctgagatgcaaaccgcaaaccgaaccgaacc 16579053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 18357527 - 18357589
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaag 63  Q
    ||||||||||| ||| ||| |||||||||||||||||||||||||||||||  ||||||||||    
T  18357527 caaattattgggaagaaaatgaaacaaattcatcactggaaatgaattgaagaagatggaaag 18357589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 42785191 - 42785126
Alignment:
Q  163 ttattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||||||| |||||||| |||||||||||| ||| ||||||||||||||||||| | |||||||||    
T  42785191 ttattcttacggtttggtttggtttggttcggtttctgagatgcaaaccgcaaaccaaaccgaacc 42785126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 6004219 - 6003989
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||   |||||||| ||||    
T  6004219 caaattattgggaagaaaaggaaacaaattcatcactggaaatgaattaaaagagatggaaaggaattagaattgaacctgatggtgcaacaatggaaaa 6004120  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || |||||||||||||||||||||| |||||||||||| |||||||||| ||||||||| |||||||||||||||||||||| |||||||||||| || |    
T  6004119 atcgaatcaaaagagattattcttgggctatgtaattgggctagtacatgtttaagtaacattcattattcttgcggtttggtttggtttggttcggtag 6004020  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||||||||||||||||||| |||||| ||||    
T  6004019 ctgagatgcaaaccgcaaaccgaaccaaacc 6003989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 21586657 - 21586447
Alignment:
Q  16 taaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaaattgaatcaaaagag 112  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||   |||||||| |||||| ||||| |||||     
T  21586657 taaaggaaacaaattcatcaccggaaatgaattgaaagagatggaaaggaattagaatcgaacctcatggtgcaacaatggaaaaatcgaatcgaaagat 21586558  T
Q  113 attattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccg 212  Q
    ||||||||||| ||||||||||  |||||||||| |||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||| |    
T  21586557 attattcttgaactatgtaatttggctagtacatgtttaagtaatattcattattcttgcgatttgg-ttggtttggttcggttgctgagatgcaaactg 21586459  T
Q  213 caaatcgaaccg 224  Q
    |||| |||||||    
T  21586458 caaaccgaaccg 21586447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 35531983 - 35531758
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| |||||||||||||| |||||| |  ||||||||||||||||||||||||||||||||||||||||| |||||   |||||||| ||||    
T  35531983 caaattattgggaagtaaaggaaacacattcataaacggaaatgaattgaaagagatggaaaggaattagaatcgaacatgatggtgcaacaatggaaaa 35531884  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || |||| ||||  |||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||     |||||||||||| ||||    
T  35531883 atcgaataaaaaacgattattcttgagctatgcaattgggctagtacatgtttaagtaatattcattattcttgcggt-----ttggtttggttcggttg 35531789  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||||||||||||| ||||||||||| |||||    
T  35531788 ctgagatgcaaactgcaaatcgaactgaacc 35531758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 50562407 - 50562226
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||| | ||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||   |||||||| ||||    
T  50562407 caaattatttggaagtaaatgaaacaaattcatcactgaaaataaattgaaagagatggaaaggaattagaatcgaacctgatggtgcaacaatggaaaa 50562308  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttgg 179  Q
    || ||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||    
T  50562307 atcgaatcgaaagagattattcttgagctatgtaattgggctagtacatgtttaagtaatattcattattcttggggtttgg 50562226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 33002774 - 33002968
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    |||||||||||| |||||||||||||||| | |||| |||||| ||||||||||||||||||||| ||||||||||||||||||   |||||||| ||||    
T  33002774 caaattattggagagtaaaggaaacaaatacttcacaggaaataaattgaaagagatggaaaggagttagaatcgaacctgatggtgcaacaatggaaaa 33002873  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttc 192  Q
    || |||||||||||||||||| ||||||||||||||||  || ||||||||||||| ||||||||||||||||||||||||| || |||||||||    
T  33002874 atcgaatcaaaagagattattattgagctatgtaattggactggtacatatttaagaaatattcattattcttgcggtttggtttagtttggttc 33002968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 32880554 - 32880787
Alignment:
Q  2 aaattattggaaagtaaaggaaacaaattcatcactggaaatgaat----------tgaaagagatggaaaggaattagaatcgaacctgatg---caac 88  Q
    |||||||||| |||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||| |||||||||   ||||    
T  32880554 aaattattgggaagtaaaggaaacaaattcatcactggaaatgaatggaaatgaattgaaagagatggaaaggaattagaatcaaacctgatggtgcaac 32880653  T
Q  89 aatgaaaaaattgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttg 188  Q
    |||| ||||||  |||| ||||||||||  |||||||||||||||||  ||||||||| ||||||||||||||||| ||||||||||     ||||||||    
T  32880654 aatggaaaaatcaaatcgaaagagattaaacttgagctatgtaattggactagtacatgtttaagtaatattcatttttcttgcggt-----ttggtttg 32880748  T
Q  189 gttcagttgctgagatgcaaaccgcaaatcgaaccgaac 227  Q
    |||| ||||||||||||||||||| ||| | ||||||||    
T  32880749 gttcggttgctgagatgcaaaccgtaaaccaaaccgaac 32880787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 39098195 - 39098373
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| ||||||||||||||| ||  ||||| ||||||||||||||||||||||||| |||||||||| | |||||||   |||||||||||||    
T  39098195 caaattattgggaagtaaaggaaacaagtttgtcactcgaaatgaattgaaagagatggaaagaaattagaatcaatcctgatggtgcaacaatgaaaaa 39098294  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtt 176  Q
    || || |||||| |||||||||||||||||| |||||| | |||||||| |||||||||||||||||||||||||||||    
T  39098295 atcgattcaaaaaagattattcttgagctatttaattgtgttagtacatgtttaagtaatattcattattcttgcggtt 39098373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 43030684 - 43030895
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctga---tgcaacaatgaaaaa 97  Q
    ||||||||||| || ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||   |||||||||| ||||    
T  43030684 caaattattgggaaataaaggaaa-aaattcatcactggagatgaattgaaagagatggaaaggaattagaatcgaacttgatggtgcaacaatggaaaa 43030782  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcgg-tttggcttggtttggttcagtt 196  Q
    || ||||| ||| ||||||||||||||||||||||||  |||||               |||||||||||||||||| ||||| |||||||||||| |||    
T  43030783 atcgaatcgaaaaagattattcttgagctatgtaatttggctag---------------tattcattattcttgcggttttggtttggtttggttcggtt 43030867  T
Q  197 gctgagatgcaaaccgcaaatcgaaccg 224  Q
    |||||||||||||||||||| |||||||    
T  43030868 gctgagatgcaaaccgcaaaccgaaccg 43030895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 27641994 - 27641870
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctga---tgcaacaatgaaaaa 97  Q
    ||||||||||| ||| |||||||| ||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||   ||| |||||| ||||    
T  27641994 caaattattgggaagaaaaggaaataaattcatcactgaaaatgaattgaaagagatggagaggaattagattcgaacctgatggtgctacaatggaaaa 27641895  T
Q  98 attgaatcaaaagagattattcttg 122  Q
    || ||||||||||||||||||||||    
T  27641894 atcgaatcaaaagagattattcttg 27641870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 129 - 228
Target Start/End: Complemental strand, 48032836 - 48032737
Alignment:
Q  129 gtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||||||| |||||||||| |||||||||||||||| ||||||||||||||| |||||||||||| | ||||||||||||||||||||| | |||||||||    
T  48032836 gtaattgggctagtacatgtttaagtaatattcatgattcttgcggtttggtttggtttggttcggctgctgagatgcaaaccgcaaaccaaaccgaacc 48032737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 10369610 - 10369674
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  10369610 tatttttgcggtttggtttggtttggttcggttgctgagatgcaaaccgcaaaccgaaccgaacc 10369674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 34794923 - 34794987
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  34794923 tatttttgcggtttggtttggtttggttcggttgctgagatgcaaaccgcaaaccgaaccgaacc 34794987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 35401894 - 35401830
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| ||||||||||||  |||||||||||||||||||||| |||||||||||    
T  35401894 tatttttgcggtttggtttggtttggttcgattgctgagatgcaaaccgcaaaccgaaccgaacc 35401830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 51149392 - 51149328
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| |||||||||||  ||||||||||||||||||| ||| |||||||||||    
T  51149392 tatttttgcggtttggtttggtttggttaggttgctgagatgcaaaccgtaaaccgaaccgaacc 51149328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 4669317 - 4669253
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||| | |||||||||||  |||||||||||||||| |||||| |||||||||||    
T  4669317 tatttttgcggtttagtttggtttggtttggttgctgagatgcaaatcgcaaaccgaaccgaacc 4669253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 33361312 - 33361364
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaa 216  Q
    |||| ||||||||||| |||||| ||||| |||||||||||||||||||||||    
T  33361312 tatttttgcggtttggtttggttcggttcggttgctgagatgcaaaccgcaaa 33361364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 36827618 - 36827388
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| ||||||| ||||||||||||||  ||||||| ||||||||||||||||||| ||||||||||||||||||||   |||||||| ||||    
T  36827618 caaattattgggaagtaaaagaaacaaattcatcggtggaaataaattgaaagagatggaaagaaattagaatcgaacctgatggtgcaacaatggaaaa 36827519  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    |||||||| |||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||| | ||    
T  36827518 attgaatcgaaagagattaatcttgagctatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttggtttggtttggttcggctg 36827419  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||||||||||||||||||| |||||| ||||    
T  36827418 ctgagatgcaaaccgcaaaccgaaccaaacc 36827388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 14549492 - 14549710
Alignment:
Q  8 ttggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaaattgaat 104  Q
    |||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||   |||||||| |||| | ||||    
T  14549492 ttgggaagtaaaggaaacaaattcatcactgaaaattaattgaaagagatggaaaggaaatagaatcgaacctgatggtacaacaatggaaaattcgaat 14549591  T
Q  105 caaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttgctgagat 204  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||     |||||||||||| | |||||||||    
T  14549592 caaaagagattattcttgagctatgtaattgggctagtacatgtttaagtaatattcattattcttacggt-----ttggtttggttcggatgctgagat 14549686  T
Q  205 gcaaaccgcaaatcgaaccgaacc 228  Q
    |||||||||||| |||||||||||    
T  14549687 gcaaaccgcaaaccgaaccgaacc 14549710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 30392337 - 30392554
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgat---gcaacaatgaaaaa 97  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||   ||| ||||| ||||    
T  30392337 caaattattggaa-gaaaaggaaacaaattcatcactggaaatgaattaaaagagatggaaaggaattagaatcaaacctcatagtgcagcaatggaaaa 30392435  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || |||||||||||||||||| ||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  30392436 atcgaatcaaaagagattattgttgggctatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttggtttggtttggttcggttg 30392535  T
Q  198 ctgagatgcaaaccgcaaa 216  Q
     |||||| |||||||||||    
T  30392536 ttgagatacaaaccgcaaa 30392554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 10661405 - 10661617
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||| |||||   |||||||||||||    
T  10661405 caaattattgggaagtaaaggaaacaaattcttcactggaaatgaattgaaagagttggaaatgaattagaatcgaacatgatggtacaacaatgaaaaa 10661504  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || ||||||||| |||| |||||||||||||||||| | |||||||||| ||||||  ||||||||||| |||||||||||| ||||||| |||  ||||    
T  10661505 atcgaatcaaaaaagataattcttgagctatgtaatcgggctagtacatgtttaagatatattcattatccttgcggtttggtttggtttagtttggttg 10661604  T
Q  198 ctgagatgcaaac 210  Q
    |||||||||||||    
T  10661605 ctgagatgcaaac 10661617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 18169852 - 18169627
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctga---tgcaacaatgaaaaa 97  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||   ||||| |||| ||||    
T  18169852 caaattatttgcaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcaaacctgatggtgcaataatggaaaa 18169753  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || ||||| | |||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||| ||     ||| |||||||| | ||    
T  18169752 atcgaatcgatagagattattcttgaggtatgtaattgggctagtacatgtttaagtaatattcattattcttgcagt-----ttgatttggttcggctg 18169658  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    | ||||||||||||||||| | |||||||||    
T  18169657 ccgagatgcaaaccgcaaaccaaaccgaacc 18169627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 18633418 - 18633193
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctga---tgcaacaatgaaaaa 97  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||   ||||| |||| ||||    
T  18633418 caaattatttgcaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcaaacctgatggtgcaataatggaaaa 18633319  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || ||||| | |||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||| ||     ||| |||||||| | ||    
T  18633318 atcgaatcgatagagattattcttgaggtatgtaattgggctagtacatgtttaagtaatattcattattcttgcagt-----ttgatttggttcggctg 18633224  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    | ||||||||||||||||| | |||||||||    
T  18633223 ccgagatgcaaaccgcaaaccaaaccgaacc 18633193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 33068849 - 33069075
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| ||| |||||||| ||||||||||||| |||||||||||| || ||| ||||||||||||||||||  |||||   |||||||| ||||    
T  33068849 caaattattgggaagaaaaggaaataaattcatcactgaaaatgaattgaaggaaatgaaaaggaattagaatcgaatttgatggtgcaacaatggaaaa 33068948  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    ||  ||||||||||||||||||||||| |||||||||| ||| ||||| |||||||||||||| |||||| ||| ||||||| || ||||||||| ||||    
T  33068949 atcaaatcaaaagagattattcttgagttatgtaattgggctggtacaaatttaagtaatattgattatttttgtggtttggtttcgtttggttcggttg 33069048  T
Q  198 ctgagatgcaaaccgcaaatcgaaccg 224  Q
    || |||||||||||||||||| |||||    
T  33069049 ctaagatgcaaaccgcaaatcaaaccg 33069075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 5 - 216
Target Start/End: Original strand, 3682180 - 3682388
Alignment:
Q  5 ttattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatgc---aacaatgaaaaaattg 101  Q
    ||||||| ||| ||| ||||||||||| ||| ||||| |||||||||| |||||| ||| ||||||||| ||||||||||    || |||| ||||||||    
T  3682180 ttattgggaagaaaatgaaacaaattcgtcagtggaa-tgaattgaaatagatggtaagaaattagaattgaacctgatggtggaaaaatggaaaaattg 3682278  T
Q  102 aatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttgctga 201  Q
    ||||||||||||||||||||  | |||||||||| |||||||||| |||| |||||||||||||||||||||||     |||||||||||| ||||||||    
T  3682279 aatcaaaagagattattcttaggttatgtaattgggctagtacatgtttaggtaatattcattattcttgcggt-----ttggtttggttcggttgctga 3682373  T
Q  202 gatgcaaaccgcaaa 216  Q
    |||||||||||||||    
T  3682374 gatgcaaaccgcaaa 3682388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 36910158 - 36909944
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctga---tgcaacaatgaaaaa 97  Q
    ||||||||||| |||||||||||| ||||||||||| | ||||||||||||||||||||||| ||||||||||| |||||||   |||||||||| ||||    
T  36910158 caaattattgggaagtaaaggaaataaattcatcaccgaaaatgaattgaaagagatggaaatgaattagaatcaaacctgatggtgcaacaatggaaaa 36910059  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || ||||||||| ||||||||||||||| ||||||||| ||||||||||         ||||||||||||||||||||     ||||| |||||| |||     
T  36910058 atggaatcaaaa-agattattcttgagc-atgtaattgggctagtacat---------atattcattattcttgcggt-----ttggtatggttcggttc 36909975  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||||||||||||||||||| |||||||||||    
T  36909974 ctgagatgcaaaccgcaaaccgaaccgaacc 36909944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 82 - 211
Target Start/End: Complemental strand, 6200678 - 6200549
Alignment:
Q  82 atgcaacaatgaaaaaattgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggct 181  Q
    ||||||||||| |||||| |||||||||||||||||||||| | |||||||||| |||||||||| ||| |||||||||||||||||||||||||||| |    
T  6200678 atgcaacaatggaaaaatcgaatcaaaagagattattcttgggttatgtaattgggctagtacatgtttcagtaatattcattattcttgcggtttggtt 6200579  T
Q  182 tggtttggttcagttgctgagatgcaaacc 211  Q
    ||||||||||  |||||| |||||||||||    
T  6200578 tggtttggtttggttgctaagatgcaaacc 6200549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 89 - 228
Target Start/End: Original strand, 44673068 - 44673211
Alignment:
Q  89 aatgaaaaaattgaatcaaaagagattattcttgagctatgta----attgagctagtacatatttaagtaatattcattattcttgcggtttggcttgg 184  Q
    |||||||||||| |||||||||  |||||| ||||||||||||    |||| |||||||||| ||||||||||||||||||||||||| |||||| ||||    
T  44673068 aatgaaaaaattaaatcaaaagcaattattattgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcagtttggtttgg 44673167  T
Q  185 tttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||||||| ||||||||||||||||||||||| | |||||||||    
T  44673168 tttggttcggttgctgagatgcaaaccgcaaaccaaaccgaacc 44673211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 3006283 - 3006232
Alignment:
Q  173 ggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccg 224  Q
    ||||||| |||||||||||| ||||||||||||||||||||||| |||||||    
T  3006283 ggtttggtttggtttggttcggttgctgagatgcaaaccgcaaaccgaaccg 3006232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 5802599 - 5802552
Alignment:
Q  181 ttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||||||||||  ||||||||||||||||||||||| |||||||||||    
T  5802599 ttggtttggtttggttgctgagatgcaaaccgcaaaccgaaccgaacc 5802552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 69361 - 69131
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    ||||||||||| ||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||   |||||||| ||||    
T  69361 caaattattgggaagaaaatgaaacaaatttatcactggaaatgaattgaaagagatggaaaggaattagaatcgaatttgatggtgcaacaatggaaaa 69262  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    || |||||||||||||||||| ||| |||||||||||  |||||||||| ||||||||||||||||||||||||||| |||  |||||||||||| ||||    
T  69261 atcgaatcaaaagagattattattgggctatgtaattaggctagtacatgtttaagtaatattcattattcttgcgggttgttttggtttggttcggttg 69162  T
Q  198 ctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    ||||||||||||||||||| | |||||||||    
T  69161 ctgagatgcaaaccgcaaaccaaaccgaacc 69131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 83 - 228
Target Start/End: Complemental strand, 77382 - 77237
Alignment:
Q  83 tgcaacaatgaaaaaattgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggctt 182  Q
    |||||||||| |||||| |||||||||| ||||||| ||| |||||||||||  |||||||||| ||||||||||||||||||||||||||| |||  ||    
T  77382 tgcaacaatggaaaaatcgaatcaaaagtgattattattgggctatgtaattaggctagtacatgtttaagtaatattcattattcttgcgggttgtttt 77283  T
Q  183 ggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||||||||| ||||||||||||||||||||||| | |||||||||    
T  77282 ggtttggttcggttgctgagatgcaaaccgcaaaccaaaccgaacc 77237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 40400 - 40173
Alignment:
Q  1 caaattattggaaagtaaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaa 97  Q
    |||||||| || |||||||| ||| |||||||||||| ||||||||||||||||||||||||  ||||||||| ||||||||||   |||||||| | ||    
T  40400 caaattatggggaagtaaagtaaataaattcatcacttgaaatgaattgaaagagatggaaataaattagaatggaacctgatgttgcaacaatggacaa 40301  T
Q  98 attgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttg 197  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||| ||||||| |||||||||||| ||||    
T  40300 attgaatcaaaagaaattattcttgagctatgtaattgggctagtagatgtttaagtaatattcattattcttgtggtttggtttggtttggttcggttg 40201  T
Q  198 ctgagatgcaaaccgcaaatcgaaccga 225  Q
     ||||||| ||||| |||| | ||||||    
T  40200 ttgagatgaaaaccacaaaccaaaccga 40173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 47581 - 47369
Alignment:
Q  16 taaaggaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaaattgaatcaaaagag 112  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||  ||||||||| ||||||||||   |||||||| | |||| |||||||||||     
T  47581 taaagtaaacaaattcatcacttgaaatgaattgaaagagatggaaataaattagaatggaacctgatgttgcaacaatggacaaatcgaatcaaaagaa 47482  T
Q  113 attattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccg 212  Q
    ||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||| ||||||| |||||||||||| |||| ||||||| |||||     
T  47481 attattcttgagctatgtaattgggctagtagatgtttaagtaatattcattattcttgtggtttggtttggtttggttcggttgttgagatgaaaacca 47382  T
Q  213 caaatcgaaccga 225  Q
    |||| | ||||||    
T  47381 caaaccaaaccga 47369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 106312 - 106522
Alignment:
Q  21 gaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaaaattgaatcaaaagagattat 117  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||   |||||||| |||||| |||| |||||| |||||    
T  106312 gaaacaaatttatcactggaaatgaattgaaagagatggaaaggaattagaatcgaatttgatggtgcaacaatggaaaaatcgaataaaaagaaattat 106411  T
Q  118 tcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaat 217  Q
    | ||  |||||||||||  |||||||||| ||||||||||||||||||||||||||| |||| | |||||||||| |||| ||||||||||||||||||     
T  106412 tattaggctatgtaattaggctagtacatgtttaagtaatattcattattcttgcgggttggttgggtttggttcggttgttgagatgcaaaccgcaaac 106511  T
Q  218 cgaaccgaacc 228  Q
    | |||||||||    
T  106512 caaaccgaacc 106522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 128898 - 129092
Alignment:
Q  1 caaattattggaaagtaaag-gaaacaaattcatcactggaaatgaattgaaagagatggaaaggaattagaatcgaacctgatg---caacaatgaaaa 96  Q
    ||||||||||| ||| |||  |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||  |||||   |||||||| |||    
T  128898 caaattattgggaagaaaaatgaaacaaatttatcactgaaaatgaattgaaagagatggaaaggaattagaatcgaatttgatggtgcaacaatggaaa 128997  T
Q  97 aattgaatcaaaagagattattcttgagctatgtaattgagctagtacatatttaagtaatattcattattcttgcggtttggcttggtttggtt 191  Q
    ||| ||||  |||||||||||| ||| |||||||||||  |||||||||| ||||||||||||||||||||||||||| |||| |||||||||||    
T  128998 aatcgaatataaagagattattattgggctatgtaattaggctagtacatgtttaagtaatattcattattcttgcgggttggtttggtttggtt 129092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 5577 - 5513
Alignment:
Q  164 tattcttgcggtttggcttggtttggttcagttgctgagatgcaaaccgcaaatcgaaccgaacc 228  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  5577 tatttttgcggtttggtttggtttggttcggttgctgagatgcaaaccgcaaaccgaaccgaacc 5513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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