View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10642_low_3 (Length: 374)
Name: NF10642_low_3
Description: NF10642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10642_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 38294911 - 38294551
Alignment:
| Q |
18 |
ataacgtggttaattaaatatgtggatagatcaatatgttgatagtta------taagaccagtcctactatattatacagactttgtcattaattatga |
111 |
Q |
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| T |
38294911 |
ataacgtggttaattaaatatatggatagatcaatatgttgatagttacagttataagaccagtccttctatattatacagactttgtcattaattatga |
38294812 |
T |
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| Q |
112 |
cgtggaaaagatcaaggacaacctttaaaatccatcaggatgaaataaagattcactttgtccccacttttatctttttggtgctaatgcaattagctta |
211 |
Q |
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| T |
38294811 |
cgtggaaaagatcaaggacaacctttaaaatccatcaggatgaaataaagattcactttgtccccacttttatctctttggtgctaatgcaattagctta |
38294712 |
T |
|
| Q |
212 |
gattatggagtaaatagtatgtggatcagatcccatacaaatatacctcaagaagaaaaaatcactttttaattaatttaaccaatctccaagaagacat |
311 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38294711 |
gattatggagtaaatagtatatggatcagatcccatacaaatatacctcaagaagaaaaaatcactttttaattaatttaaccaatctccaagaagacat |
38294612 |
T |
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| Q |
312 |
tatcatgacaaaacttcttgctgctctaagaatgcaggagggctaagttctttcccctttg |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38294611 |
tatcatgacaaaacttcttgctgctctaagaatgcaggagggctaagttctttcccctttg |
38294551 |
T |
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