View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10642_low_4 (Length: 301)
Name: NF10642_low_4
Description: NF10642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10642_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 42265616 - 42265410
Alignment:
| Q |
1 |
ataatattgacttgaataactattttgaggattcagaaatgtatctgctaaatgttggtgtgtttgatgaacaccaattttcaatcagaataatcaaaag |
100 |
Q |
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| T |
42265616 |
ataatattgacttgaataactattttgaggattcagaaatgtatctgccaaatgttggtgtgtttgatgaacaccaattttcagtcagaagaatcaaaaa |
42265517 |
T |
|
| Q |
101 |
gaggagaaacaatctaatcaaaccaccaaattgtgagcacttgaatcaccaaacagccaaattgtgagactcg-------aaacaaccaaacagtgagca |
193 |
Q |
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| T |
42265516 |
gaagagaaacaatctaatcaaaccaccaaattgtgagcacttgaatcaccaaacaaccaaattgtgagactcgactcaccaaacaaccaaacagtgagca |
42265417 |
T |
|
| Q |
194 |
cttgatc |
200 |
Q |
| |
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||||||| |
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| T |
42265416 |
cttgatc |
42265410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 24225554 - 24225502
Alignment:
| Q |
116 |
aatcaaaccaccaaattgtgagcacttgaatcaccaaacagccaaattgtgag |
168 |
Q |
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| T |
24225554 |
aatcaaacaaccaaattgtaagcactcgattcaccaaacaaccaaattgtgag |
24225502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 24136955 - 24136914
Alignment:
| Q |
128 |
aaattgtgagcacttgaatcaccaaacagccaaattgtgaga |
169 |
Q |
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| T |
24136955 |
aaattgtgagcactcgactcaccaaacaaccaaattgtgaga |
24136914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 38584131 - 38584180
Alignment:
| Q |
119 |
caaaccaccaaattgtgagcacttgaatcaccaaacagccaaattgtgag |
168 |
Q |
| |
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||||| |||||||||||||||||| | ||||||||| |||||||||||| |
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| T |
38584131 |
caaacaaccaaattgtgagcacttaactcaccaaactaccaaattgtgag |
38584180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 19825112 - 19825161
Alignment:
| Q |
119 |
caaaccaccaaattgtgagcacttgaatcaccaaacagccaaattgtgag |
168 |
Q |
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||||| ||||||||||||||||| || || ||||||| |||||||||||| |
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| T |
19825112 |
caaacaaccaaattgtgagcactcgactcgccaaacaaccaaattgtgag |
19825161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 24487088 - 24487128
Alignment:
| Q |
127 |
caaattgtgagcacttgaatcaccaaacagccaaattgtga |
167 |
Q |
| |
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||||||||||| |||||| |||||||||| ||||||||||| |
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| T |
24487088 |
caaattgtgagaacttgactcaccaaacaaccaaattgtga |
24487128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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