View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10642_low_8 (Length: 274)
Name: NF10642_low_8
Description: NF10642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10642_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 617182 - 617449
Alignment:
| Q |
18 |
aggaagtgggattggctctggctgtagtagcattaatactattaccttttaaaatatatccgccaaactcgttgtcaatccagacatgcactat------ |
111 |
Q |
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| T |
617182 |
aggaagtgggattggctctggctgtagtagcattaattctattatcttttaaaatatatccgccaaactcgttgtcaatccagacatgcactatatatat |
617281 |
T |
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| Q |
112 |
----------------atatatcctggagtacttctgaattctgtattctttgtcatggcccttatttgggctacttcatcccatcttccctcttgtgca |
195 |
Q |
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| T |
617282 |
atatatatatatatatatatatcctggagtagttctgaattctgtattctttgtcatggcccttatttgggctacttcatcccatcttcccccttgtgca |
617381 |
T |
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| Q |
196 |
catatatttgataccaaagcataagcacctcaactatgtggttccaattctaatatctgtttccctat |
263 |
Q |
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| T |
617382 |
catatatttgataccaaagcataagcacctgaactatgtggttccaattctaatatctgtttccctat |
617449 |
T |
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Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 76 - 263
Target Start/End: Original strand, 15370220 - 15370403
Alignment:
| Q |
76 |
tccgccaaactcgttgtcaatccagacatgcactatatatatcctggagtacttctgaattctgtattctttgtcatggcccttatttgggctacttcat |
175 |
Q |
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| T |
15370220 |
tccgccaaacttgttgtcaatccaaacatgcactatat----ccaggagtacttttgaattctgtattctttgtcatggcccttatttgggctacttcat |
15370315 |
T |
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| Q |
176 |
cccatcttccctcttgtgcacatatatttgataccaaagcataagcacctcaactatgtggttccaattctaatatctgtttccctat |
263 |
Q |
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| T |
15370316 |
cccatcttcccccttgtgcacatatatttgatactaaagcataaggacctgaactatgtggttccaattttaatatctgtttccctat |
15370403 |
T |
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