View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10643_high_4 (Length: 250)
Name: NF10643_high_4
Description: NF10643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10643_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 74 - 240
Target Start/End: Complemental strand, 49988390 - 49988223
Alignment:
| Q |
74 |
gtacgagttcatcaattttctgaaattgatatggtcatcttgcattacagagaaaccagcg-aagatcaaacctactattttgagatctttacacaaatg |
172 |
Q |
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| T |
49988390 |
gtacgagttcatcaattttctgaaattgatatggtcatcttgcattacagagaaaccagcggaagatcaaacctactattttgagatctttacacaaatg |
49988291 |
T |
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| Q |
173 |
atactaaacggaaacaagattagtggttacttgaataatttgtttatccctaaataagcactcctatg |
240 |
Q |
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| T |
49988290 |
atactaaacggaaacaagattagtggttacttgaataatttgtttatccctaaataagcactcctatg |
49988223 |
T |
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Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 49988537 - 49988477
Alignment:
| Q |
3 |
acgtttcaacactgacatacacatgtgatgaaaggtggaatgaatttcatcattcacataa |
63 |
Q |
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| T |
49988537 |
acgtttcaacactgacatacacatgtgatgaaaggttgaatgaatttcatcattcacataa |
49988477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 42297378 - 42297458
Alignment:
| Q |
67 |
agctcatgtacgagttcatcaattttctgaaattgatatggtcatcttgcattacagagaaaccagcgaagatcaaaccta |
147 |
Q |
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| T |
42297378 |
agctcatgtacgagttcatcgattttccgaaattgatacggccatcttgcattataaagaaattggcgaagatcaaaccta |
42297458 |
T |
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