View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10643_low_1 (Length: 556)
Name: NF10643_low_1
Description: NF10643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10643_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 506; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 1 - 538
Target Start/End: Complemental strand, 3576031 - 3575495
Alignment:
| Q |
1 |
aggttttctagttgtggaagttgtaggaaattattagcatcattattattaatgtgtatattgtattgcaattgatccaactcttgtttgcaagggtaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3576031 |
aggttttctagttgtggaagttgtaggaaattattagcatcattattattaatgtgtatattgtattgcaattgatccaactcttgtttgcaaggataat |
3575932 |
T |
|
| Q |
101 |
gctgttgttgatgttggtatgatgcattataagggtgatgagaagaaattctgcttggggattcaagctctgattgcatgaatgatacttgatcatcata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3575931 |
gctgttgttgatgttggtatgatgcattataagggtgatgagaagaaattctgcttggggattcaagctctgattgcatgaatgatacttgatcatcata |
3575832 |
T |
|
| Q |
201 |
ccaacatggtgaatcgtccattttcctcattgttgtagctattcgtttcttgaacactttacacacaacccatccttcttcctataaaatatgtgcttat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3575831 |
ccaacatggtgaatcgtccattttcctcattgttgtagctattcgtttcttgaacactttacacacaacccatccttcttcctataaaatatgtgcttat |
3575732 |
T |
|
| Q |
301 |
tacattagacaagatgataatatatatattcttgtttttcagaaaaagaaagaaaatattaaatatgtgcttattataagtattattacctgaggagtag |
400 |
Q |
| |
|
|||||||||| | | ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3575731 |
tacattagacgacaagatgata-atatattcttgtttttcagaaaaagaaagaaaatattaaatatgtgcttattataagtattattacctgaggagtag |
3575633 |
T |
|
| Q |
401 |
ttccattttcatttgtttctaagcgatactcatgcatgatccaatcagatttttgaccattaggtgctcttcctttatagaagacaagagtctttctcat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3575632 |
ttccattttcatttgtttctaagcgatactcatgcatgatccaatcagatttttgaccattaggtgctcttcctttatagaagacaagagtctttctcat |
3575533 |
T |
|
| Q |
501 |
tccaatcagacaaatatggtttgaataaattgctttgt |
538 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3575532 |
tccaatcagacaaatatggttagaataaattgctttgt |
3575495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 430 - 506
Target Start/End: Complemental strand, 8450273 - 8450197
Alignment:
| Q |
430 |
tcatgcatgatccaatcagatttttgaccattaggtgctcttcctttatagaagacaagagtctttctcattccaat |
506 |
Q |
| |
|
||||||||||||||||||||||| || |||||||| ||||||||||| ||||| ||||| ||||| ||||| ||||| |
|
|
| T |
8450273 |
tcatgcatgatccaatcagatttctgtccattaggggctcttcctttgtagaaaacaagggtcttcctcatcccaat |
8450197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 426 - 507
Target Start/End: Complemental strand, 9003448 - 9003367
Alignment:
| Q |
426 |
atactcatgcatgatccaatcagatttttgaccattaggtgctcttcctttatagaagacaagagtctttctcattccaatc |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||| || | ||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
9003448 |
atactcatgcatgatccaatcagatttttggccatgaggagcacgacctttgtagaaaacaagagtctttctcattccaatc |
9003367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 430 - 509
Target Start/End: Original strand, 32225528 - 32225607
Alignment:
| Q |
430 |
tcatgcatgatccaatcagatttttgaccattaggtgctcttcctttatagaagacaagagtctttctcattccaatcag |
509 |
Q |
| |
|
||||||||||||||||||| ||| || |||||||||||||||||||| ||||| || || ||||| |||||||||||||| |
|
|
| T |
32225528 |
tcatgcatgatccaatcagttttctgtccattaggtgctcttcctttgtagaaaacgagtgtcttcctcattccaatcag |
32225607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 430 - 506
Target Start/End: Complemental strand, 12276746 - 12276670
Alignment:
| Q |
430 |
tcatgcatgatccaatcagatttttgaccattaggtgctcttcctttatagaagacaagagtctttctcattccaat |
506 |
Q |
| |
|
|||||||| |||||||||| ||||| |||| ||| ||||| ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
12276746 |
tcatgcataatccaatcagtcttttgtccatgaggagctctacctttgtagaacacaagagtctttctcattccaat |
12276670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 401 - 510
Target Start/End: Original strand, 42048483 - 42048592
Alignment:
| Q |
401 |
ttccattttcatttgtttctaagcgatactcatgcatgatccaatcagatttttgaccattaggtgctcttcctttatagaagacaagagtctttctcat |
500 |
Q |
| |
|
||||||||| ||| ||||| | || |||||||||||||||||||||||||| || ||||| || || | |||||| || || || |||||||||||||| |
|
|
| T |
42048483 |
ttccattttgattagtttcaagacggtactcatgcatgatccaatcagatttctgtccatttggggcacgtcctttgtaaaacactagagtctttctcat |
42048582 |
T |
|
| Q |
501 |
tccaatcaga |
510 |
Q |
| |
|
|||| |||| |
|
|
| T |
42048583 |
cccaaccaga |
42048592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 460
Target Start/End: Complemental strand, 26496974 - 26496938
Alignment:
| Q |
424 |
cgatactcatgcatgatccaatcagatttttgaccat |
460 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
26496974 |
cgatactcatgcatgatccaatcagttttgtgaccat |
26496938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University