View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10643_low_11 (Length: 231)

Name: NF10643_low_11
Description: NF10643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10643_low_11
NF10643_low_11
[»] chr4 (4 HSPs)
chr4 (20-126)||(2464147-2464258)
chr4 (148-206)||(6736819-6736876)
chr4 (173-206)||(2464260-2464293)
chr4 (155-195)||(6736865-6736905)
[»] chr7 (13 HSPs)
chr7 (20-167)||(15695256-15695408)
chr7 (20-167)||(15702236-15702388)
chr7 (144-209)||(15687963-15688028)
chr7 (144-209)||(15695556-15695621)
chr7 (144-209)||(15702536-15702601)
chr7 (148-209)||(15695524-15695585)
chr7 (148-209)||(15702504-15702565)
chr7 (154-209)||(15687937-15687992)
chr7 (144-174)||(15687999-15688029)
chr7 (144-174)||(15695592-15695622)
chr7 (144-174)||(15702572-15702602)
chr7 (177-209)||(15695517-15695549)
chr7 (177-209)||(15702497-15702529)
[»] chr3 (8 HSPs)
chr3 (20-104)||(24207433-24207518)
chr3 (148-209)||(45227373-45227433)
chr3 (144-206)||(29896990-29897051)
chr3 (148-209)||(13468056-13468117)
chr3 (148-209)||(13468092-13468153)
chr3 (148-185)||(45227408-45227445)
chr3 (148-206)||(45227454-45227511)
chr3 (149-206)||(13468129-13468186)
[»] chr8 (7 HSPs)
chr8 (148-209)||(21541868-21541929)
chr8 (148-209)||(21541796-21541857)
chr8 (144-209)||(21541828-21541893)
chr8 (148-209)||(21541976-21542037)
chr8 (144-209)||(21541936-21542001)
chr8 (148-205)||(21542012-21542069)
chr8 (148-209)||(21541904-21541965)
[»] scaffold0312 (5 HSPs)
scaffold0312 (148-207)||(18704-18763)
scaffold0312 (138-206)||(18659-18726)
scaffold0312 (148-206)||(18740-18797)
scaffold0312 (148-207)||(18629-18692)
scaffold0312 (173-206)||(18618-18651)
[»] chr1 (5 HSPs)
chr1 (148-207)||(411807-411866)
chr1 (138-206)||(411844-411911)
chr1 (148-206)||(411773-411830)
chr1 (148-207)||(411878-411941)
chr1 (173-206)||(411919-411952)
[»] chr6 (10 HSPs)
chr6 (148-206)||(33296217-33296275)
chr6 (154-209)||(33296189-33296242)
chr6 (144-209)||(29934743-29934806)
chr6 (148-195)||(29934782-29934828)
chr6 (148-209)||(27575822-27575883)
chr6 (148-195)||(29934852-29934898)
chr6 (148-193)||(27314006-27314051)
chr6 (148-209)||(29934817-29934876)
chr6 (148-190)||(29934698-29934739)
chr6 (177-209)||(33296151-33296183)
[»] chr5 (5 HSPs)
chr5 (148-209)||(37369068-37369127)
chr5 (148-209)||(37369102-37369163)
chr5 (148-209)||(37369941-37370002)
chr5 (148-208)||(37369977-37370037)
chr5 (148-202)||(37369138-37369191)
[»] chr2 (10 HSPs)
chr2 (148-206)||(45682244-45682302)
chr2 (144-209)||(2743628-2743691)
chr2 (148-209)||(2743702-2743761)
chr2 (148-193)||(11951355-11951400)
chr2 (152-209)||(45682213-45682269)
chr2 (148-209)||(2743597-2743656)
chr2 (148-209)||(2743667-2743726)
chr2 (148-195)||(2743737-2743783)
chr2 (174-209)||(45682185-45682220)
chr2 (163-209)||(11951405-11951451)
[»] scaffold0927 (1 HSPs)
scaffold0927 (148-203)||(3482-3537)


Alignment Details
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 2464147 - 2464258
Alignment:
Q  20 actagcatacatgataaaaatcaatacgaaattgtaactaggtgatgagagcttgaatagcaagtgaagtgatcaaaattaatgc-----gtgaattaaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||     ||||||||||    
T  2464147 actagcatacatgataaaaatcaatacgaaattgtaactaggtgatgagagcttgaaaagcaagtgaagtgatcaaaattaatgcagcctgtgaattaaa 2464246  T
Q  115 cgataatagtat 126  Q
    ||||||||||||    
T  2464247 cgataatagtat 2464258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 6736876 - 6736819
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggt 206  Q
    ||||||| |||||| |||||| ||||| |||||||||||||||||||| ||||| ||||    
T  6736876 ccacaacaaagaga-aatgtgctatatttccgttcgccacaacgaagagataatatggt 6736819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 2464260 - 2464293
Alignment:
Q  173 atctccgttcgccacaacgaagaaataatgtggt 206  Q
    ||||||||||||||||||||||| ||||||||||    
T  2464260 atctccgttcgccacaacgaagagataatgtggt 2464293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 6736905 - 6736865
Alignment:
Q  155 gaagagataatgtggtatatctccgttcgccacaacgaaga 195  Q
    ||||| ||||||||| |||||||||||||||||||| ||||    
T  6736905 gaagaaataatgtggcatatctccgttcgccacaacaaaga 6736865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 15695256 - 15695408
Alignment:
Q  20 actagcatacatgataaaaatcaatacgaaattgtaactaggtgatgagagcttgaatagcaagtgaagtgatcaaaattaatgc-----gtgaattaaa 114  Q
    ||||||||||||| ||||| |||||| |||| ||||||||||||||||||| |||||||| |||||||||||||||| |||||||      |||||||||    
T  15695256 actagcatacatgctaaaagtcaatatgaaaatgtaactaggtgatgagagattgaatagtaagtgaagtgatcaaagttaatgcagcctatgaattaaa 15695355  T
Q  115 cgataatagtattttaaaattgacgtccattcaccacaacgaagagataatgt 167  Q
     | | |||||||||||||||| |  ||| ||| ||||||||||||||||||||    
T  15695356 tgttcatagtattttaaaattaatatccgttctccacaacgaagagataatgt 15695408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 15702236 - 15702388
Alignment:
Q  20 actagcatacatgataaaaatcaatacgaaattgtaactaggtgatgagagcttgaatagcaagtgaagtgatcaaaattaatgc-----gtgaattaaa 114  Q
    ||||||||||||| ||||| |||||| |||| ||||||||||||||||||| |||||||| |||||||||||||||| |||||||      |||||||||    
T  15702236 actagcatacatgctaaaagtcaatatgaaaatgtaactaggtgatgagagattgaatagtaagtgaagtgatcaaagttaatgcagcctatgaattaaa 15702335  T
Q  115 cgataatagtattttaaaattgacgtccattcaccacaacgaagagataatgt 167  Q
     | | |||||||||||||||| |  ||| ||| ||||||||||||||||||||    
T  15702336 tgttcatagtattttaaaattaatatccgttctccacaacgaagagataatgt 15702388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 15687963 - 15688028
Alignment:
Q  144 ttcaccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggtata 209  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  15687963 ttcaccacaacgatgagataatgtggtatatctccgttcaccacaacgaagagataatgtggtata 15688028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 15695556 - 15695621
Alignment:
Q  144 ttcaccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggtata 209  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  15695556 ttcaccacaacgatgagataatgtggtatatctccgttcaccacaacgaagagataatgtggtata 15695621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 15702536 - 15702601
Alignment:
Q  144 ttcaccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggtata 209  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  15702536 ttcaccacaacgatgagataatgtggtatatctccgttcaccacaacgaagagataatgtggtata 15702601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 15695524 - 15695585
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggtata 209  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||| || |||||||||||||    
T  15695524 ccacaacgaagagataatgtggtatatttccgttcaccacaacgatgagataatgtggtata 15695585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 15702504 - 15702565
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggtata 209  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||| || |||||||||||||    
T  15702504 ccacaacgaagagataatgtggtatatttccgttcaccacaacgatgagataatgtggtata 15702565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 15687937 - 15687992
Alignment:
Q  154 cgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggtata 209  Q
    ||||||||||||||||||||| ||||||| ||||||||| || |||||||||||||    
T  15687937 cgaagagataatgtggtatatttccgttcaccacaacgatgagataatgtggtata 15687992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 174
Target Start/End: Original strand, 15687999 - 15688029
Alignment:
Q  144 ttcaccacaacgaagagataatgtggtatat 174  Q
    |||||||||||||||||||||||||||||||    
T  15687999 ttcaccacaacgaagagataatgtggtatat 15688029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 174
Target Start/End: Original strand, 15695592 - 15695622
Alignment:
Q  144 ttcaccacaacgaagagataatgtggtatat 174  Q
    |||||||||||||||||||||||||||||||    
T  15695592 ttcaccacaacgaagagataatgtggtatat 15695622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 174
Target Start/End: Original strand, 15702572 - 15702602
Alignment:
Q  144 ttcaccacaacgaagagataatgtggtatat 174  Q
    |||||||||||||||||||||||||||||||    
T  15702572 ttcaccacaacgaagagataatgtggtatat 15702602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 15695517 - 15695549
Alignment:
Q  177 ccgttcgccacaacgaagaaataatgtggtata 209  Q
    ||||||||||||||||||| |||||||||||||    
T  15695517 ccgttcgccacaacgaagagataatgtggtata 15695549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 15702497 - 15702529
Alignment:
Q  177 ccgttcgccacaacgaagaaataatgtggtata 209  Q
    ||||||||||||||||||| |||||||||||||    
T  15702497 ccgttcgccacaacgaagagataatgtggtata 15702529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 24207518 - 24207433
Alignment:
Q  20 actagcatacatgataaaaatcaatacgaaattgtaactaggtgatgagagcttgaatagcaagtgaagtg-atcaaaattaatgc 104  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  24207518 actagcatacatgataaaaatcaatattaaattgtaactaggtgatgagagattgaatagcaagtgaagtgaatcaaaattaatgc 24207433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 45227373 - 45227433
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggtata 209  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||    
T  45227373 ccacaacgaagata-aatgtggtatatctccgttcgccacaacgaagagataatgtggtata 45227433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 29897051 - 29896990
Alignment:
Q  144 ttcaccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggt 206  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||| | ||||||||||    
T  29897051 ttcaccacaacgaagaga-aatgtggtatatctctgttcgccacaacgaaaagataatgtggt 29896990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 13468056 - 13468117
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggtata 209  Q
    ||||| |||||||||||||| ||| ||||| ||||||||||||||||| |||||||||||||    
T  13468056 ccacagcgaagagataatgttgtacatctcggttcgccacaacgaagagataatgtggtata 13468117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 13468092 - 13468153
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggtata 209  Q
    ||||||||||||||||||||||||||||| ||| || ||||||||||| ||||| |||||||    
T  13468092 ccacaacgaagagataatgtggtatatcttcgtccgtcacaacgaagagataatatggtata 13468153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 45227408 - 45227445
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgcc 185  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45227408 ccacaacgaagagataatgtggtatatctccgttcgcc 45227445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 45227454 - 45227511
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggt 206  Q
    ||||||| |||||| |||||| ||||||||||||| |||||||||||| ||||||||||    
T  45227454 ccacaacaaagaga-aatgtgatatatctccgttcaccacaacgaagagataatgtggt 45227511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 13468129 - 13468186
Alignment:
Q  149 cacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggt 206  Q
    ||||||||||||||||| |||||||||||  ||| || |||||||||  |||||||||    
T  13468129 cacaacgaagagataatatggtatatctctattcaccccaacgaagagttaatgtggt 13468186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 21541868 - 21541929
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggtata 209  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||    
T  21541868 ccacaacgaagagataatgtggtatacctccgttcgccacaacgaagagataatatggtata 21541929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 21541796 - 21541857
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggtata 209  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| | |||||||||||||    
T  21541796 ccacaacgaagagataatgtggtatatatccgttcaccacaacgaaaagataatgtggtata 21541857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 21541828 - 21541893
Alignment:
Q  144 ttcaccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggtata 209  Q
    |||||||||||||| |||||||||||||||| |  ||||||||||||||||| |||||||||||||    
T  21541828 ttcaccacaacgaaaagataatgtggtatatttatgttcgccacaacgaagagataatgtggtata 21541893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 21541976 - 21542037
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggtata 209  Q
    ||||||||||| |||||||||||||| ||| ||||||||||||||||| |||||||||||||    
T  21541976 ccacaacgaagggataatgtggtatacctctgttcgccacaacgaagagataatgtggtata 21542037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 21541936 - 21542001
Alignment:
Q  144 ttcaccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggtata 209  Q
    ||||||||||| || |||||||||| ||||| |||||||||||||||||||  |||||||||||||    
T  21541936 ttcaccacaacaaaaagataatgtgatatatttccgttcgccacaacgaagggataatgtggtata 21542001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 21542012 - 21542069
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtgg 205  Q
    ||||||||||||||||||||||||||||  |||||||||||| ||||| |||| ||||    
T  21542012 ccacaacgaagagataatgtggtatatcctcgttcgccacaatgaagagataacgtgg 21542069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 21541904 - 21541965
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggtata 209  Q
    |||||||||||||||||| |||||||| ||||||| ||||||| || | |||||||| ||||    
T  21541904 ccacaacgaagagataatatggtatatatccgttcaccacaacaaaaagataatgtgatata 21541965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 18704 - 18763
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggta 207  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||    
T  18704 ccacaacgaagagataatgtggttaatctccgttcgccacaacgaagagataatgtggta 18763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 18659 - 18726
Alignment:
Q  138 cgtccattcaccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggt 206  Q
    ||||| ||| |||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||    
T  18659 cgtccgttcgccacaacgaagagataatgtggta-atctccgtttgccacaacgaagagataatgtggt 18726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 18740 - 18797
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggt 206  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||    
T  18740 ccacaacgaagagataatgtggta-atctccgttcaccacaacgaagagataatgtggt 18797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 18629 - 18692
Alignment:
Q  148 ccacaacgaagagataatgtggtatatc----tccgttcgccacaacgaagaaataatgtggta 207  Q
    |||||||||||||||||||||||  |||    |||||||||||||||||||| |||||||||||    
T  18629 ccacaacgaagagataatgtggttaatctccgtccgttcgccacaacgaagagataatgtggta 18692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 18618 - 18651
Alignment:
Q  173 atctccgttcgccacaacgaagaaataatgtggt 206  Q
    ||||||||||||||||||||||| ||||||||||    
T  18618 atctccgttcgccacaacgaagagataatgtggt 18651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 411866 - 411807
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggta 207  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||    
T  411866 ccacaacgaagagataatgtggttaatctccgttcgccacaacgaagagataatgtggta 411807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 411911 - 411844
Alignment:
Q  138 cgtccattcaccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggt 206  Q
    ||||| ||| |||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||    
T  411911 cgtccgttcgccacaacgaagagataatgtggta-atctccgtttgccacaacgaagagataatgtggt 411844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 411830 - 411773
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggt 206  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||    
T  411830 ccacaacgaagagataatgtggta-atctccgttcaccacaacgaagagataatgtggt 411773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 411941 - 411878
Alignment:
Q  148 ccacaacgaagagataatgtggtatatc----tccgttcgccacaacgaagaaataatgtggta 207  Q
    |||||||||||||||||||||||  |||    |||||||||||||||||||| |||||||||||    
T  411941 ccacaacgaagagataatgtggttaatctccgtccgttcgccacaacgaagagataatgtggta 411878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 411952 - 411919
Alignment:
Q  173 atctccgttcgccacaacgaagaaataatgtggt 206  Q
    ||||||||||||||||||||||| ||||||||||    
T  411952 atctccgttcgccacaacgaagagataatgtggt 411919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 33296217 - 33296275
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggt 206  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||    
T  33296217 ccacaacgaagaaataatgtggtatatttccgttcgccacaacgaagagataatgtggt 33296275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 33296189 - 33296242
Alignment:
Q  154 cgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggtata 209  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  33296189 cgaagagataatgtggtatatc--cgttcgccacaacgaagaaataatgtggtata 33296242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 29934743 - 29934806
Alignment:
Q  144 ttcaccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggtata 209  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||| | |||||||||||    
T  29934743 ttcaccacaacgaagaga-aatgtggtatatcaccgttcgccacaacgaagaga-aatgtggtata 29934806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 29934782 - 29934828
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaaga 195  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  29934782 ccacaacgaagaga-aatgtggtatatctccgttcgccacaacgaaga 29934828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 27575883 - 27575822
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggtata 209  Q
    |||||||||||||| |||||||| ||||||||||| ||||||| |||| | |||||||||||    
T  27575883 ccacaacgaagagaaaatgtggtctatctccgttcaccacaacaaagagacaatgtggtata 27575822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 29934852 - 29934898
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaaga 195  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||    
T  29934852 ccacaacgaagaga-aatgtggtatatcaccgttcgccacaacgaaga 29934898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 27314051 - 27314006
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaa 193  Q
    ||||||||||||||||||||||| ||||||||||| | ||||||||    
T  27314051 ccacaacgaagagataatgtggtctatctccgttcactacaacgaa 27314006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 29934817 - 29934876
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggtata 209  Q
    |||||||||||||| |||||||| |||| ||||||||||||||||||| | |||||||||||    
T  29934817 ccacaacgaagaga-aatgtggtgtatcaccgttcgccacaacgaagaga-aatgtggtata 29934876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 29934698 - 29934739
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaac 190  Q
    |||||||||||||| |||||||||||||||||||| |||||||    
T  29934698 ccacaacgaagaga-aatgtggtatatctccgttcaccacaac 29934739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 33296151 - 33296183
Alignment:
Q  177 ccgttcgccacaacgaagaaataatgtggtata 209  Q
    ||||||||||||||||||| |||||||||||||    
T  33296151 ccgttcgccacaacgaagagataatgtggtata 33296183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 37369068 - 37369127
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggtata 209  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||    
T  37369068 ccacaacgaagagataatgtggtatatc--cgttcgccacaacgaagagataatgtggtata 37369127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 37369102 - 37369163
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggtata 209  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| |||||||    
T  37369102 ccacaacgaagagataatgtggtatatttccgttcgccacaacaaagagataatttggtata 37369163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 37369941 - 37370002
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggtata 209  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||| |||||||||||||    
T  37369941 ccacaacgaagagataatgtgacatatttccgttcgccacaacgaagagataatgtggtata 37370002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 37369977 - 37370037
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggtat 208  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||  ||||||||||||    
T  37369977 ccacaacgaagagataatgtggtatatctctgtttgccacaacgaagggataatgtggtat 37370037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 37369138 - 37369191
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatg 202  Q
    ||||||| |||||||||| |||||||| |||||||||||||||||||| ||||||    
T  37369138 ccacaacaaagagataatttggtatat-tccgttcgccacaacgaagagataatg 37369191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 45682244 - 45682302
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggt 206  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||    
T  45682244 ccacaacgaagagataatgtggtatatccccgtttgccacaacgaagagataatgtggt 45682302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 2743628 - 2743691
Alignment:
Q  144 ttcaccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggtata 209  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||| | |||||||||||    
T  2743628 ttcaccacaacgaagaga-aatgtggtatatcaccgttcgccacaacgaagaga-aatgtggtata 2743691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 2743702 - 2743761
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggtata 209  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||    
T  2743702 ccacaacgaagaga-aatgtggtatatctccgttcgccacaacgaagaga-aatgtggtata 2743761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 11951355 - 11951400
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaa 193  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  11951355 ccacaacgaagagataatatggtatatctccgttcgccacaacgaa 11951400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 45682213 - 45682269
Alignment:
Q  152 aacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggtata 209  Q
    |||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  45682213 aacggagagataatgtg-tatatctccgttcgccacaacgaagagataatgtggtata 45682269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 2743597 - 2743656
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggtata 209  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||| | |||||||||||    
T  2743597 ccacaacgaagaga-aatgtggtatatctccgttcaccacaacgaagaga-aatgtggtata 2743656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 2743667 - 2743726
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgtggtata 209  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||| | |||||||||||    
T  2743667 ccacaacgaagaga-aatgtggtatatcaccgttcgccacaacgaagaga-aatgtggtata 2743726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 2743737 - 2743783
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaaga 195  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||    
T  2743737 ccacaacgaagaga-aatgtggtatatcaccgttcgccacaacgaaga 2743783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 209
Target Start/End: Complemental strand, 45682220 - 45682185
Alignment:
Q  174 tctccgttcgccacaacgaagaaataatgtggtata 209  Q
    |||||||||||||||||||||| |||||||||||||    
T  45682220 tctccgttcgccacaacgaagagataatgtggtata 45682185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 11951405 - 11951451
Alignment:
Q  163 aatgtggtatatctccgttcgccacaacgaagaaataatgtggtata 209  Q
    |||||| |||||||||| |||||| |||||||| |||||||||||||    
T  11951405 aatgtgatatatctccgctcgccataacgaagagataatgtggtata 11951451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 3537 - 3482
Alignment:
Q  148 ccacaacgaagagataatgtggtatatctccgttcgccacaacgaagaaataatgt 203  Q
    ||||||||||||||||||||||||||| | ||||| |||||||||||| |||||||    
T  3537 ccacaacgaagagataatgtggtatattttcgttccccacaacgaagagataatgt 3482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University