View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10643_low_2 (Length: 440)
Name: NF10643_low_2
Description: NF10643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10643_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Original strand, 13647822 - 13648234
Alignment:
| Q |
18 |
cataggccctcttcaccacctcctcaatacaaccaaaaaatcatcatttccatcatcttttttctttaagagcaatttcttcaaagtggatagaacctgc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
13647822 |
cataggccctcttcaccacctcctcaatacaaccaaaaaatcatcatttccatcatcttttttctctaagagcaatttcttcaaagtggatagaacctgc |
13647921 |
T |
|
| Q |
118 |
atggagtggcttgactctcaacaattgaaatcagttatatatgttagctttggaagcactacaccaatgaagagagaagaaataattgagatttggcatg |
217 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13647922 |
atggcgtggcttgactctcaaccattgaaatcagttatatatgttagctttggaagcactacaccaatgaagagagaagaaataattgagatttggcatg |
13648021 |
T |
|
| Q |
218 |
gtttattgaatagcaaaaaacagtttttatgggtgattaggccaaacatggtacaagaaaaaggattattaagtgagcttgaggaagggactagtaagga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13648022 |
gtttattgaatagcaaaaaacagtttttatgggtgattaggccaaacatggtacaagaaaaaggattattaagtgagcttgaggaagggactcgtaagga |
13648121 |
T |
|
| Q |
318 |
aaaagggttgattgttgggtgggtcccacaagaggaagttttgtcacataaggcaattggtgcgtttttgacacataatgggtggaattcaactttggaa |
417 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13648122 |
aaaaggtttgattgttgggtgggtcccacaagaggaagttttgtcacataaggcaattggtgcttttttgacacataatgggtggaattcaactttggaa |
13648221 |
T |
|
| Q |
418 |
agtgtggtctgtg |
430 |
Q |
| |
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|||||||| |||| |
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| T |
13648222 |
agtgtggtttgtg |
13648234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 430
Target Start/End: Original strand, 13658354 - 13658762
Alignment:
| Q |
22 |
ggccctcttcaccacctcctcaatacaaccaaaaaatcatcatttccatcatcttttttctttaagagcaatttcttcaaagtggatagaacctgcatgg |
121 |
Q |
| |
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|||||||||||||||| |||||| || || |||||| |||||| |||| || | | || ||||||||||||||| ||||||||||||| |||||| |
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| T |
13658354 |
ggccctcttcaccaccacctcaacaccacaaaaaaaacatcatcgtcatcgtcctcctcctccaagagcaatttcttcgaagtggatagaacttgcatga |
13658453 |
T |
|
| Q |
122 |
agtggcttgactctcaacaattgaaatcagttatatatgttagctttggaagcactacaccaatgaagagagaagaaataattgagatttggcatggttt |
221 |
Q |
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|||||||| ||||||| |||||||| ||| |||||||||||||||| |||| || ||||||||| |||||||||| |||||||||||||| ||||| |
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| T |
13658454 |
catggcttgaatctcaaccgttgaaatcggttgtatatgttagctttggtagcatcaccccaatgaagggagaagaaatcattgagatttggcacggttt |
13658553 |
T |
|
| Q |
222 |
attgaatagcaaaaaacagtttttatgggtgattaggccaaacatggtacaagaaaaaggattattaagtgagcttgaggaagggactagtaaggaaaaa |
321 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||| ||| || ||| |
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| T |
13658554 |
attgaatagcaaaaaaccatttttgtgggtgattaggccaaacatggtacaagaaaaaggactattgaaggagcttgaggaagggactactaaagagaaa |
13658653 |
T |
|
| Q |
322 |
gggttgattgttgggtgggtcccacaagaggaagttttgtcacataaggcaattggtgcgtttttgacacataatgggtggaattcaactttggaaagtg |
421 |
Q |
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||| ||||||| |||||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||||| ||| |||||||| |||||||| |||| |
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| T |
13658654 |
gggatgattgtggggtgggttccacaagaggaagttttgtcacacaaagcaattggtgcctttttgacacatagtggatggaattctactttggagagtg |
13658753 |
T |
|
| Q |
422 |
tggtctgtg |
430 |
Q |
| |
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|||| |||| |
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| T |
13658754 |
tggtttgtg |
13658762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 90 - 430
Target Start/End: Original strand, 13652949 - 13653289
Alignment:
| Q |
90 |
caatttcttcaaagtggatagaacctgcatggagtggcttgactctcaacaattgaaatcagttatatatgttagctttggaagcactacaccaatgaag |
189 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| || ||||||| ||||| |||||| |||||||||||||||||||||| ||| |||||| | |
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| T |
13652949 |
caatttcttcaaagtggatagaacctgcatgacatggctcgaatctcaaccgttgaagtcagttgtatatgttagctttggaagcaccacaacaatgacg |
13653048 |
T |
|
| Q |
190 |
agagaagaaataattgagatttggcatggtttattgaatagcaaaaaacagtttttatgggtgattaggccaaacatggtacaagaaaaaggattattaa |
289 |
Q |
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|
|||||||||||| ||||| ||||||| ||||| ||||| ||||||||| || || ||||||||||| ||||||||||||||||||||| || || ||| |
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| T |
13653049 |
agagaagaaatacttgagttttggcacggtttgttgaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaaaagactaataa |
13653148 |
T |
|
| Q |
290 |
gtgagcttgaggaagggactagtaaggaaaaagggttgattgttgggtgggtcccacaagaggaagttttgtcacataaggcaattggtgcgtttttgac |
389 |
Q |
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|| ||||||||||||||||||||||| ||||| |||||||| | ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13653149 |
aagaacttgaggaagggactagtaaggagaaaggtttgattgtggagtgggctccacaagaggaagttttgtcacataaggcaattggtgcttttttgac |
13653248 |
T |
|
| Q |
390 |
acataatgggtggaattcaactttggaaagtgtggtctgtg |
430 |
Q |
| |
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||||| ||| |||||||| |||||||| |||||||| |||| |
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| T |
13653249 |
acatagtggatggaattctactttggagagtgtggtttgtg |
13653289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 26672241 - 26672162
Alignment:
| Q |
343 |
ccacaagaggaagttttgtcacataaggcaattggtgcgtttttgacacataatgggtggaattcaactttggaaagtgt |
422 |
Q |
| |
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|||||||||||||||||| |||| ||||||| | |||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
26672241 |
ccacaagaggaagttttgggacattcatcaattggagggtttttgacacataatggttggaattcaacgttggaaagtgt |
26672162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 26943839 - 26943760
Alignment:
| Q |
343 |
ccacaagaggaagttttgtcacataaggcaattggtgcgtttttgacacataatgggtggaattcaactttggaaagtgt |
422 |
Q |
| |
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|||||||||||||||||| |||| ||||||| | |||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
26943839 |
ccacaagaggaagttttgggacattcatcaattggagggtttttgacacataatggttggaattcaacgttggaaagtgt |
26943760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 410
Target Start/End: Complemental strand, 20156911 - 20156859
Alignment:
| Q |
358 |
ttgtcacataaggcaattggtgcgtttttgacacataatgggtggaattcaac |
410 |
Q |
| |
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||||||||||| ||||| ||||| |||||||||||| ||| ||||||||||| |
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| T |
20156911 |
ttgtcacataaagcaataggtgcatttttgacacattgtggatggaattcaac |
20156859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 417
Target Start/End: Complemental strand, 27224227 - 27224168
Alignment:
| Q |
358 |
ttgtcacataaggcaattggtgcgtttttgacacataatgggtggaattcaactttggaa |
417 |
Q |
| |
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||||||||||| ||||| ||||| |||||||||||| ||| ||||||||||| |||||| |
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| T |
27224227 |
ttgtcacataaagcaataggtgcatttttgacacattgtggttggaattcaacattggaa |
27224168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 422
Target Start/End: Original strand, 31210024 - 31210072
Alignment:
| Q |
374 |
ttggtgcgtttttgacacataatgggtggaattcaactttggaaagtgt |
422 |
Q |
| |
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||||||| |||| ||| |||||||| ||||||||||||||||| ||||| |
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|
| T |
31210024 |
ttggtgcattttggactcataatggttggaattcaactttggagagtgt |
31210072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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