View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10643_low_4 (Length: 259)
Name: NF10643_low_4
Description: NF10643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10643_low_4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 27017600 - 27017846
Alignment:
| Q |
17 |
atcacccaacattcaaccctatatagcacggctggtcttatgctttacagggcnnnnnnnnnnnnn----cttgagtaacatttctctatcacaaatcac |
112 |
Q |
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| T |
27017600 |
atcacccaacattcaaccctatatagcacggctggtcttatgctttacagggcaaaaaaaaaaaaaaaaacttgagtaacatttctctatcacaaatcac |
27017699 |
T |
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| Q |
113 |
acacccaaaccaacgctccgattaactcaccctcctagttgtatcctacagtttacatctccctatctccccattattttttatgatgaacctaaggtac |
212 |
Q |
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| T |
27017700 |
acacccaaaccaactctccaattaactcgccctcctagttgtatcctacagtttacatctccctatctccccattattttttatgatgaacctaaggtac |
27017799 |
T |
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| Q |
213 |
ccaaatcatgatatttgagataagatatgttttccaatttctgtctc |
259 |
Q |
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| T |
27017800 |
ccaaatcatgatatttgaggtaagatatgtttttcaatttctgtctc |
27017846 |
T |
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Target: chr1; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 94 - 259
Target Start/End: Original strand, 27017965 - 27018130
Alignment:
| Q |
94 |
tttctctatcacaaatcacacacccaaaccaacgctccgattaactcaccctcctagttgtatcctacagtttacatctccctatctccccattattttt |
193 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27017965 |
tttctctatcacaaatcacacacccaaaccaactctccgattaactcgccctcctagttgtatcctacagtttacatctccctatctccccattattttt |
27018064 |
T |
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| Q |
194 |
tatgatgaacctaaggtacccaaatcatgatatttgagataagatatgttttccaatttctgtctc |
259 |
Q |
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| T |
27018065 |
tatgatgaacctaaggtacccaaatcatgatatttgaggtaagatatgttttccaatttctgtctc |
27018130 |
T |
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