View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10643_low_5 (Length: 257)
Name: NF10643_low_5
Description: NF10643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10643_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 10498888 - 10499127
Alignment:
| Q |
15 |
agcacagaagcatagcaaatccacaggagtttgaatagtagccttcttacttctgtcaatcaaaccaatcagaagcagcatcactatcacatgaccaacc |
114 |
Q |
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| T |
10498888 |
agcacagaagcatagcaaatccacaggagtttgaatagtagccttcttacttctgtcaatcaaaccaatcagaagcagcatcactatcacatgaccaacc |
10498987 |
T |
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| Q |
115 |
ttggtttttaggtcatttactgtttttatatccaaccattttggtcgttcctgagaaggagaaacaatcgaattagcatcaaagataatttatcatcaag |
214 |
Q |
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| T |
10498988 |
ttggtttttaggtcatttactgtttttatatccaaccattttggtcgttcctgagacggagaaacaatggaattagcatcaaagataatttatcatcaag |
10499087 |
T |
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| Q |
215 |
aattttctaatttcctaaggtaattgactaggaaaaagaatgt |
257 |
Q |
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| T |
10499088 |
aattttctaatttcctaagg---ttgactaggaaaaagaatgt |
10499127 |
T |
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