View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10643_low_8 (Length: 240)
Name: NF10643_low_8
Description: NF10643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10643_low_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 49988906 - 49988682
Alignment:
| Q |
15 |
tcattgaacacttcaatgtcattcgcctctaatcatagaacaagagatttgattcctacaattatgaaatgtaacataaaagacaacgatgcaagacgag |
114 |
Q |
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| T |
49988906 |
tcattgaacacttcaatgtcattcgcctctaatcgtagaacaagagatttgatttctacaatcatgaaatgtaacataaaagacaacgatgcaagacgag |
49988807 |
T |
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| Q |
115 |
tataacttaaacactaataagacaaacaaaatgtaactatagagaataattcggggaaaagaaacttaaaaccaatccgaaataatttaaagcataacag |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49988806 |
cataacttaaacactaataagacaaacaaaatgtaactatagagaataattcggggaaaagaaacttaaaaccaatccgaaataatttaaagcaccacag |
49988707 |
T |
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| Q |
215 |
acgtaatttggtatataaattctatt |
240 |
Q |
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||||||||||||||| |||||||||| |
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| T |
49988706 |
acgtaatttggtata-aaattctatt |
49988682 |
T |
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