View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10643_low_9 (Length: 240)
Name: NF10643_low_9
Description: NF10643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10643_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 7301470 - 7301687
Alignment:
| Q |
1 |
tcgaataaactaattgtaataggcccttatttccatatagaataatctttttagnnnnnnnnn--agttcagattaaaacttctctatttctttgaaggt |
98 |
Q |
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| T |
7301470 |
tcgaataaactaattgtaataggcccttatttccatatagaataatctttttaggttttttttttagttcaaattaaaacttctctttttctttgaaggt |
7301569 |
T |
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| Q |
99 |
tacttggttaaaacatgacgcaaagggcacaaatgcaacagctatgtttagaaaagggtcagtggcactgatgacacacatagtttacgtgttgcattca |
198 |
Q |
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| T |
7301570 |
tacttggttaaaacatgacgcaaagggcacaaatgcaacaactaagtttagaaaagggtcag---------tgacacacatagtttacgtgttgcattca |
7301660 |
T |
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| Q |
199 |
gatgagtaaaaggaactatgtaaatgg |
225 |
Q |
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| T |
7301661 |
gatgagtaaaaggaactatgtaaatgg |
7301687 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 213
Target Start/End: Complemental strand, 44516836 - 44516696
Alignment:
| Q |
71 |
attaaaacttctctatttctttgaaggttacttggttaaaacatgacgcaaagggcacaa-atgcaacagctatgtttagaaaagggtcagtggcactga |
169 |
Q |
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|||| ||||| ||| ||||||||||||||||| |||||| || ||| |||||||| |||| ||||||| | | |||||| | |||||||||||||| |
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| T |
44516836 |
attataacttgtctgtttctttgaaggttactaggttaatacctgatgcaaaggggacaacatgcaac--cagagactagaaa-gagtcagtggcactga |
44516740 |
T |
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| Q |
170 |
tgacacacatagtttacgtgttgcattcagatgagtaaaaggaa |
213 |
Q |
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| T |
44516739 |
ttatacacatattttgcgtgttccattcagatcagaaaaaggaa |
44516696 |
T |
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