View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10644_1 (Length: 555)
Name: NF10644_1
Description: NF10644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10644_1 |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 419; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 65 - 555
Target Start/End: Original strand, 16230926 - 16231416
Alignment:
| Q |
65 |
agttgacatacgaggcagaactgggttcaaccagcaggaggggataaatgctataacccaattcgttgagccaaaagacgatctagagaagcaaattgaa |
164 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||| ||| |
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| T |
16230926 |
agttgacatacgaggcagaactgggttcaaccagcaggaggggataaatgctaaaaaggaattcgttgagccaaaagacgatcaagagaagcaaatcgaa |
16231025 |
T |
|
| Q |
165 |
tcctcaaataccaccgttaaatgaaataaacaatcatgaggaggttgatacatttggacagattttcaggactgaaacagttccctctaaaggcttatgt |
264 |
Q |
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|||||||||||||| ||||| |||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
16231026 |
tcctcaaataccacagttaagtgaaatgaacaatcatgtggaggttgatacatttggacagattttcacgactgaaacagttccctctaaaggcttatgt |
16231125 |
T |
|
| Q |
265 |
aagttcaatcattttgaatataaagtctcacatgaatttcaatcaacagtaaagaatttaaagtaaagattgttaatagcactagtcattccatatatag |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
16231126 |
aagttcaatcattttgaatataaagtctcacatgaatttcaatcaacagtaaagaatttaaattaaagattgttaatagcactagtcattccatatatag |
16231225 |
T |
|
| Q |
365 |
aaaaataattaatgttcaatcattttgactacgaagtctcaagtaacagaagacattacatttttgcgatgaagaagcccatcatcaccaataactagac |
464 |
Q |
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||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
16231226 |
aaaaataatgaacgttcaatcattttgattacgaagtctcaagtaacagaagacattacatttttgcgatgaagaagcccatcatcgccaataactagac |
16231325 |
T |
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| Q |
465 |
ctgatacattcttggatggcgtttcagcggaaactgtttcaaacagtccttcttttcttttctttgatgaagtttcagcatcatctttctg |
555 |
Q |
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| T |
16231326 |
ctgatacattcttggatggcgtttcagcagaaactgtttcaaacggtccttcttttcttttctttgatgaagtttcagcatcatctttctg |
16231416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 67 - 357
Target Start/End: Original strand, 34688689 - 34688961
Alignment:
| Q |
67 |
ttgacatacgaggcagaactgggttcaaccagcaggaggggataaatgctataacccaattcgttgagccaaaagacgatctagagaagcaaattgaatc |
166 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||||||||||| | || | |||||||||||||| |||| |||||||||||| || || |
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| T |
34688689 |
ttgacatacgaggcagaactggattcaaccaacaggaggggataaatgctaaacaggaacttgttgagccaaaagatgatcaagagaagcaaatcgagtc |
34688788 |
T |
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| Q |
167 |
ctcaaataccaccgttaaatgaaataaacaatcatgaggaggttgatacatttggacagattttcaggactgaaacagttccctctaaaggcttatgtaa |
266 |
Q |
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| T |
34688789 |
ctcaaataccacaattag-tgagatgaacaataatgtggaggttgatacatttggacagactttcaggattgaaacagttccctgtaaa----------- |
34688876 |
T |
|
| Q |
267 |
gttcaatcattttgaatataaagtctcacatgaatttcaatcaacagtaaagaatttaaagtaaagattgttaatagcactagtcattcca |
357 |
Q |
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||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34688877 |
------tcattttgaatataaagactcacatgaatttcagtcaatagtaaagaatttaaagtaacgattgttaatagcactagtcattcca |
34688961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 67 - 357
Target Start/End: Original strand, 34711101 - 34711373
Alignment:
| Q |
67 |
ttgacatacgaggcagaactgggttcaaccagcaggaggggataaatgctataacccaattcgttgagccaaaagacgatctagagaagcaaattgaatc |
166 |
Q |
| |
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|||||||||||||||||||||| |||||||| ||||||||||||||||||| | || | |||||||||||||| |||| |||||||||||| || || |
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| T |
34711101 |
ttgacatacgaggcagaactggattcaaccaacaggaggggataaatgctaaacaggaacttgttgagccaaaagatgatcaagagaagcaaatcgagtc |
34711200 |
T |
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| Q |
167 |
ctcaaataccaccgttaaatgaaataaacaatcatgaggaggttgatacatttggacagattttcaggactgaaacagttccctctaaaggcttatgtaa |
266 |
Q |
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|||||||||||| ||| ||| || |||||| ||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||| |
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| T |
34711201 |
ctcaaataccacaattag-tgagatgaacaataatgtggaggttgatacatttggacagactttcaggattgaaacagttccctgtaaa----------- |
34711288 |
T |
|
| Q |
267 |
gttcaatcattttgaatataaagtctcacatgaatttcaatcaacagtaaagaatttaaagtaaagattgttaatagcactagtcattcca |
357 |
Q |
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||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34711289 |
------tcattttgaatataaagactcacatgaatttcagtcaatagtaaagaatttaaagtaacgattgttaatagcactagtcattcca |
34711373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 287 - 345
Target Start/End: Complemental strand, 35925343 - 35925285
Alignment:
| Q |
287 |
aagtctcacatgaatttcaatcaacagtaaagaatttaaagtaaagattgttaatagca |
345 |
Q |
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|||||||||| |||||||| |||| ||||||||||| ||| |||||||||||||||||| |
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| T |
35925343 |
aagtctcacaagaatttcagtcaatagtaaagaattcaaaataaagattgttaatagca |
35925285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 261
Target Start/End: Complemental strand, 35546781 - 35546645
Alignment:
| Q |
124 |
aattcgttgagccaaaagacgatctagagaagcaaattgaatcctcaaataccaccgttaaatgaaataaacaatcatgaggaggttgatacatttggac |
223 |
Q |
| |
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|||| |||||||| ||||| |||| ||||||| |||| || |||| |||||| || |||| ||| |||||||| ||| || |||||||| |||||||| |
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| T |
35546781 |
aatttgttgagcccaaagatgatcaagagaagaaaatcgagtccttaaatacgacaattaa-tgagataaacaacaatgtggcggttgatagatttggac |
35546683 |
T |
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| Q |
224 |
agattttcaggactgaaacagttccctctaaaggctta |
261 |
Q |
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||| |||| |||| ||||| || |||||||||||||| |
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| T |
35546682 |
agactttctagactaaaacatttgcctctaaaggctta |
35546645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 16230868 - 16230908
Alignment:
| Q |
1 |
acagcacacctactcccagtgagaaacttattattattatt |
41 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||| |
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| T |
16230868 |
acagcacacctactcccaatgaggaacttattattattatt |
16230908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 34689781 - 34689833
Alignment:
| Q |
299 |
aatttcaatcaacagtaaagaatttaaagtaaagattgttaatagcactagtc |
351 |
Q |
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||||||| |||| |||||| | | |||||| |||||||||||||||||||||| |
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| T |
34689781 |
aatttcagtcaatagtaaaaagtctaaagttaagattgttaatagcactagtc |
34689833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 34712193 - 34712245
Alignment:
| Q |
299 |
aatttcaatcaacagtaaagaatttaaagtaaagattgttaatagcactagtc |
351 |
Q |
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||||||| |||| |||||| | | |||||| |||||||||||||||||||||| |
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| T |
34712193 |
aatttcagtcaatagtaaaaagtctaaagttaagattgttaatagcactagtc |
34712245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 103 - 261
Target Start/End: Original strand, 4384080 - 4384237
Alignment:
| Q |
103 |
aggggataaatgctataacccaattcgttgagccaaaagacgatctagagaagcaaattgaatcctcaaataccaccgttaaatgaaataaacaatcatg |
202 |
Q |
| |
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|||||||| |||||| || ||||||||||||||||||| |||| ||||||||||| || || |||||| |||| | ||| ||| |||||||| ||| |
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| T |
4384080 |
aggggatagatgctaaaaaggaattcgttgagccaaaagatgatcaagagaagcaaacagagtcttcaaatgccacagctaa-tgagataaacaacaatg |
4384178 |
T |
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| Q |
203 |
aggaggttgatacatttggacagattttcaggactgaaacagttccctctaaaggctta |
261 |
Q |
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| |||| ||| ||||||||||| || ||||||||||||| |||| |||||||||||| |
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| T |
4384179 |
tgtcggttaatatatttggacagacttccaggactgaaacatttccgtctaaaggctta |
4384237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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