View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10644_10 (Length: 330)
Name: NF10644_10
Description: NF10644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10644_10 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 6969337 - 6969032
Alignment:
| Q |
17 |
caacctactttgttataaggcctgaagtacattgtttagtttgtaattcagcataatcaccaacaatgtttcaaccttagcatattaatctaacttataa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6969337 |
caacctactttgttataaggcctgaagtacattgtttagtttgtaattcagcataatcaccaacaatgtttcaaccttagcatattaatctaacttataa |
6969238 |
T |
|
| Q |
117 |
taaagtaaattaagactctaatgtaagcatagaaatagagattcatagtaatgttttaataagactctaatataaaataactagcaatattgcctaggaa |
216 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6969237 |
taaagtaaattaagactcgaatgtaagcatagaaatagagattcatactaatgttttaataagactctaatataaaataactagcaatattgcctaggaa |
6969138 |
T |
|
| Q |
217 |
ttttcagccttctgcatcttctgcctccttctctgatgaaccctcttcacctgtcccttcatctctctcgacccttcatctctgcttctttcttggcttt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| | |||||||||||||||||||||||||||| |
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| T |
6969137 |
ttttcagccttctgcatcttctgcctccttctctgatgaaccctcttcacctgtcccttcttctttctc-agccttcatctctgcttctttcttggcttt |
6969039 |
T |
|
| Q |
317 |
catctca |
323 |
Q |
| |
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||||||| |
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| T |
6969038 |
catctca |
6969032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 93 - 215
Target Start/End: Original strand, 999959 - 1000088
Alignment:
| Q |
93 |
ttagcatattaatctaacttataataaagtaaattaagactctaatgtaagcatagaaatagagattcatagtaatg------ttttaataagactct-- |
184 |
Q |
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|||||| |||||||||||||||| ||| |||||| ||||| |||||||||||||||||||||| | | ||| ||||| |||||||||||| || |
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| T |
999959 |
ttagcacattaatctaacttatattaatgtaaatcaagacactaatgtaagcatagaaatagatact-atactaatgttttaattttaataagaccctaa |
1000057 |
T |
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| Q |
185 |
aatataaaataactagcaatattgcctagga |
215 |
Q |
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||||||||||||| ||||||||||||||||| |
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| T |
1000058 |
aatataaaataaccagcaatattgcctagga |
1000088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 187
Target Start/End: Complemental strand, 2178513 - 2178425
Alignment:
| Q |
98 |
atattaatctaacttataataaagtaaattaagactctaatgtaagcatagaaatagagattcatagtaatgttttaataagactctaat |
187 |
Q |
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|||||||||||||| ||||||| |||| ||||| | |||||||||||| |||||||| ||||||| ||||||||||||| ||||||||| |
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| T |
2178513 |
atattaatctaact-ataataatctaaaataagaatgtaatgtaagcatggaaatagatattcatactaatgttttaatacgactctaat |
2178425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 323
Target Start/End: Original strand, 1000130 - 1000227
Alignment:
| Q |
225 |
cttctgcatcttctgcctccttctctgatgaaccctcttcacctgtcccttcatctctctcgacccttcatctctgcttctttcttggctttcatctca |
323 |
Q |
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| T |
1000130 |
cttctgcatcttctgcctcctcctctagtgaatcctcttcactagtccccttttctttctcaacc-ttcatctctgcttctttcttagctttcatctca |
1000227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 51315840 - 51315915
Alignment:
| Q |
121 |
gtaaattaagactctaatgtaagcatagaaatagagattcatagtaatgttttaataagactctaatataaaataa |
196 |
Q |
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||||| |||||||||| ||||| ||| |||||||| ||||||| ||| ||||| ||||||||||||| ||||||| |
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| T |
51315840 |
gtaaaataagactctattgtaaacatggaaatagatattcatattaacgttttcataagactctaatgcaaaataa |
51315915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 51315982 - 51316026
Alignment:
| Q |
232 |
atcttctgcctccttctctgatgaaccctcttcacctgtcccttc |
276 |
Q |
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||||||||||||||||||||||||| ||||| ||| |||||||| |
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| T |
51315982 |
atcttctgcctccttctctgatgaatcctctccactagtcccttc |
51316026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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