View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10644_11 (Length: 309)
Name: NF10644_11
Description: NF10644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10644_11 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 36540811 - 36541034
Alignment:
| Q |
15 |
aagacgaattgttcgtgataatttgattcttaaatggaacaatattttgtaagaatttacttaactcaactctgaattactagacctctttctgctagaa |
114 |
Q |
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| T |
36540811 |
aagacgaattgttcgtgataatttgattcttaaatggaacaatattttataagaatttacttaactcaactctgaattactagacctctttccgctagaa |
36540910 |
T |
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| Q |
115 |
ccagagggtgaacnnnnnnnnnnnnnngcaagcaagataggtagaaatttattagtttccagcgcctcattgaatgtatgggtatgtactatctattgat |
214 |
Q |
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| T |
36540911 |
ctagagggtgaac-caaaaaaaaaaaagcaagcaagataggtagaaatttattagtttccagcgcctcatttaatgtatgggtatgtactatctattgat |
36541009 |
T |
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| Q |
215 |
aactacaagagcttgaactaataag |
239 |
Q |
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| T |
36541010 |
aactacaagagcttgaactaataag |
36541034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 36541412 - 36541477
Alignment:
| Q |
244 |
agaaatagaaaatatctgttgctattcatgttgttacaatagaaatcatcccttagagagaaataa |
309 |
Q |
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| T |
36541412 |
agaaatagaaaacatttgttgctattcatgttgttacaatagaaatcatcccttagagagaaataa |
36541477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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