View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10644_3 (Length: 458)
Name: NF10644_3
Description: NF10644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10644_3 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 32 - 403
Target Start/End: Original strand, 16230520 - 16230890
Alignment:
| Q |
32 |
gaaaggatatgcaaggcataactgaatttgaccacgacatttgattaaattccagtacgcatactctaaccaaagatgctattcctactgatggaaaagc |
131 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16230520 |
gaaaggatatgcaaggcataactgaattcgaccacgacatttgattaaattccagtacgcatactctaaccaaagatgctattcctactgatgtgaaaga |
16230619 |
T |
|
| Q |
132 |
tatacaatacacaactaaattctggacaaatggcaaaaataaagtcgatgagctaacagatgatcaagggaagctaacaaagtcctcaattacaacagtt |
231 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
16230620 |
tatacaatacacaactgaattctggacaaatggcaaaaataaagtcgatgagctaacagatgatcaaaggaagctaacaaagtcctcaattacaacagtc |
16230719 |
T |
|
| Q |
232 |
ggtaagaaaaggaactattccatttatgattttacttctaacagtaaaatgaatgattctctcgaaaggcttagaagccggtcaaatatcataagagcca |
331 |
Q |
| |
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||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| | |||||| |
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| T |
16230720 |
ggtgagaaaaggaactatgccatttatgattttacttctaacactaaaatgaatgattctctcgaaaggc-tagaagccagtcaaatatcagatgagcca |
16230818 |
T |
|
| Q |
332 |
gactccataatatatggcataatagacaacagaaactcggtggaaatcgacagcacacctactcccagtgag |
403 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16230819 |
gactccataatctatggcataatagacaacagaaactcggtggaaatcgacagcacacctactcccaatgag |
16230890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 35 - 384
Target Start/End: Original strand, 34688290 - 34688638
Alignment:
| Q |
35 |
aggatatgcaaggcataactgaatttgaccacgacatttgattaaattccagtacgcatactctaaccaaagatgctattcctactgatggaaaagctat |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
34688290 |
aggatatgcaaggcataactgaatttgaccacgacacttgattaaattccagtatgcatactctaaccaaagatgctattcctacttatggaaaagatat |
34688389 |
T |
|
| Q |
135 |
acaatacacaactaaattctggacaaatggcaaaaataaagtcgatgagc---taacagatgatcaagggaagctaacaaagtcctcaattacaacagtt |
231 |
Q |
| |
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|| | ||||||| ||| ||||||||||| |||||| |||||| |||||| ||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
34688390 |
acgaaacacaaccgaatcctggacaaatgccaaaaagaaagtcaatgagctaataacagatgatcaagggaagctaacgaagtcctcaattacaaaagtt |
34688489 |
T |
|
| Q |
232 |
ggtaagaaaaggaactattccatttatgattttacttctaacagtaaaatgaatgattctctcgaaaggcttagaagccggtcaaatatcataagagcca |
331 |
Q |
| |
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| |||||| |||| | | |||||||||||||||||| | | ||| |||||||| |||||||||||||||||| |||||||||||| | ||| | |
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| T |
34688490 |
actgagaaaaagaaccacgcaatttatgattttacttctgagactaa----aatgattccctcgaaaggcttagaagctggtcaaatatcagatgagaaa |
34688585 |
T |
|
| Q |
332 |
gactccataatatatggcataatagacaacagaaactcggtggaaatcgacag |
384 |
Q |
| |
|
||||||||||| |||||| | |||||||||||||||| |||||| |||||||| |
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|
| T |
34688586 |
gactccataatctatggcctgatagacaacagaaactaggtggacatcgacag |
34688638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 35 - 384
Target Start/End: Original strand, 34710702 - 34711050
Alignment:
| Q |
35 |
aggatatgcaaggcataactgaatttgaccacgacatttgattaaattccagtacgcatactctaaccaaagatgctattcctactgatggaaaagctat |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
34710702 |
aggatatgcaaggcataactgaatttgaccacgacacttgattaaattccagtatgcatactctaaccaaagatgctattcctacttatggaaaagatat |
34710801 |
T |
|
| Q |
135 |
acaatacacaactaaattctggacaaatggcaaaaataaagtcgatgagc---taacagatgatcaagggaagctaacaaagtcctcaattacaacagtt |
231 |
Q |
| |
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|| | ||||||| ||| ||||||||||| |||||| |||||| |||||| ||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
34710802 |
acgaaacacaaccgaatcctggacaaatgccaaaaagaaagtcaatgagctaataacagatgatcaagggaagctaacgaagtcctcaattacaaaagtt |
34710901 |
T |
|
| Q |
232 |
ggtaagaaaaggaactattccatttatgattttacttctaacagtaaaatgaatgattctctcgaaaggcttagaagccggtcaaatatcataagagcca |
331 |
Q |
| |
|
| |||||| |||| | | |||||||||||||||||| | | ||| |||||||| |||||||||||||||||| |||||||||||| | ||| | |
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|
| T |
34710902 |
actgagaaaaagaaccacgcaatttatgattttacttctgagactaa----aatgattccctcgaaaggcttagaagctggtcaaatatcagatgagaaa |
34710997 |
T |
|
| Q |
332 |
gactccataatatatggcataatagacaacagaaactcggtggaaatcgacag |
384 |
Q |
| |
|
||||||||||| |||||| | |||||||||||||||| |||||| |||||||| |
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| T |
34710998 |
gactccataatctatggcctgatagacaacagaaactaggtggacatcgacag |
34711050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 208 - 395
Target Start/End: Complemental strand, 35565035 - 35564848
Alignment:
| Q |
208 |
acaaagtcctcaattacaacagttggtaagaaaaggaactatt----ccatttatgattttacttctaacagtaaaatgaatgattctctcgaaaggctt |
303 |
Q |
| |
|
|||||||||||| ||||| ||||| || |||||| ||||||| | ||||||||||| |||||||| | |||||||| ||||| |||||||| |
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|
| T |
35565035 |
acaaagtcctcatttacagcagttagtgagaaaaagaactatatatgcgatttatgatttgacttctaagactaaaatga----ttctcatgaaaggcta |
35564940 |
T |
|
| Q |
304 |
agaagccggtcaaatatcataagagccagactccataatatatggcataatagacaacagaaactcggtggaaatcgacagcacacctactc |
395 |
Q |
| |
|
|| ||| |||||||||||| | |||||||||||||| || ||| |||| |||||| |||||||| | ||||||| ||||| ||| |||||| |
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| T |
35564939 |
aggagctggtcaaatatcagatgagccagactccatcatctattgcatgatagacgacagaaacacattggaaattgacagtacatctactc |
35564848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 208 - 339
Target Start/End: Complemental strand, 35547075 - 35546948
Alignment:
| Q |
208 |
acaaagtcctcaattacaacagttggtaagaaaaggaactattccatttatgattttacttctaacagtaaaatgaatgattctctcgaaaggcttagaa |
307 |
Q |
| |
|
||||||||||||||||||| |||| | |||||| ||||||| ||||||||||| |||||||| | ||| |||||||||| |||||||| || | |
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| T |
35547075 |
acaaagtcctcaattacaaaagttactgagaaaaagaactatatgatttatgatttgacttctaagactaa----aatgattctcatgaaaggctaagga |
35546980 |
T |
|
| Q |
308 |
gccggtcaaatatcataagagccagactccat |
339 |
Q |
| |
|
|| |||||||||||| | |||||||||||||| |
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| T |
35546979 |
gctggtcaaatatcagatgagccagactccat |
35546948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 150 - 358
Target Start/End: Original strand, 46519911 - 46520115
Alignment:
| Q |
150 |
attctggacaaatggcaaaaataaagtcgatgagctaacagatgatcaagggaagctaacaaagtcctcaattacaacagttggtaagaaaaggaactat |
249 |
Q |
| |
|
|||||||||||||| |||||| |||| ||||||| ||||| |||||||| ||||||||||||||||||| ||||||| ||| || ||||| |||||| |
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| T |
46519911 |
attctggacaaatgccaaaaagaaagccgatgaggtaacatttgatcaagagaagctaacaaagtcctcagttacaactgttagtgggaaaacgaactac |
46520010 |
T |
|
| Q |
250 |
tccatttatgattttacttctaacagtaaaatgaatgattctctcgaaaggcttagaagccggtcaaatatcataagagccagactccataatatatggc |
349 |
Q |
| |
|
||||||||||| |||||| | ||| |||||||| |||||||||||||||||| |||| ||||||||| |||||||| ||| |||| |||||| |
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| T |
46520011 |
gtgatttatgatttgacttctgagcctaa----aatgattccctcgaaaggcttagaagctggtcgaatatcatatgagccagattccctaatctatggc |
46520106 |
T |
|
| Q |
350 |
ataatagac |
358 |
Q |
| |
|
|| |||||| |
|
|
| T |
46520107 |
atgatagac |
46520115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 121
Target Start/End: Original strand, 46519823 - 46519909
Alignment:
| Q |
35 |
aggatatgcaaggcataactgaatttgaccacgacatttgattaaattccagtacgcatactctaaccaaagatgctattcctactg |
121 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||| ||| ||||||||||||||| || |||||| ||||| || |||||||||||| |
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|
| T |
46519823 |
aggatatacaaggcagaactgaatttgaccacggcatcagattaaattccagtatgcctactctcaccaaggagcctattcctactg |
46519909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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