View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10644_4 (Length: 423)
Name: NF10644_4
Description: NF10644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10644_4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 26137199 - 26136795
Alignment:
| Q |
1 |
ctctggtgatatgtagggtgttgttaacttgaaaattttggtgctatttcaactagtaacattcgttacttacacctctcccttatttttctggttattt |
100 |
Q |
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| T |
26137199 |
ctctggtgatatgtagggtgt----aacttgaaaattttggtgctatttcaactagaaacattcgttacttacacctctcccttatttttctggttattt |
26137104 |
T |
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| Q |
101 |
tgtccgcatgttctgattgagaagatgttggtatttaggaaaagggtggattatcactcagttgtcttttcactttttctgcacagcataagtaggtccc |
200 |
Q |
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| T |
26137103 |
tgtccgcatgttctgattgagaagatgttgttatttaggaaaagggtggattatcactcagttgtcttttcactttttctgcacagcataagtaggtccc |
26137004 |
T |
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| Q |
201 |
aagggagcatcagaataaaggcattattgttttggggtaatccctctgtattctttctaaattggattgaccccctttgacaaaaaatacaagttatcaa |
300 |
Q |
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| T |
26137003 |
aagggagcatca--------------ttgttttggggtaatccctctgtattctttctaaattggattgaccccctttgacaaaaaatacaagttatcaa |
26136918 |
T |
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| Q |
301 |
taagatgagttcacttgaagtttgtggtttgttgataaaatttagcgtagtatttagttacggtctatgtgacgttggttcaatagtaattacaatcagt |
400 |
Q |
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| T |
26136917 |
taagatgagttcacttgaagtttgtggtttgttgataaaatttagcgtagtatttaattacggtctatgtgacgctggttcaatagtaattacaatcggt |
26136818 |
T |
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| Q |
401 |
tcttgccaaagtattcttaaata |
423 |
Q |
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| T |
26136817 |
tcttgccaaagtattcttaaata |
26136795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 267 - 338
Target Start/End: Complemental strand, 26129070 - 26128999
Alignment:
| Q |
267 |
ttgaccccctttgacaaaaaatacaagttatcaataagatgagttcacttgaagtttgtggtttgttgataa |
338 |
Q |
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| T |
26129070 |
ttgaccccctttgacaaaaaattcaagttatcaataaaatgagtttacttgaagtttggggtttgttgataa |
26128999 |
T |
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