View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10644_6 (Length: 382)
Name: NF10644_6
Description: NF10644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10644_6 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 10 - 364
Target Start/End: Original strand, 26080507 - 26080861
Alignment:
| Q |
10 |
tactataacagcattttcttgtacatgttggaaaaacataacgccaaatcagttctgatatcagcttagttcatttataaaatgttgttgacaaatactg |
109 |
Q |
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| T |
26080507 |
tactataacagcattttcttgtacatgttggaaaaacataacgccgaatcagttctgatatcagcttagttcatttataaaatgttgttgacaaatactg |
26080606 |
T |
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| Q |
110 |
aaacgatgagtgattttttatatttgtaactggtgatctagatatggactagcacacagcagcgaactattcttaccgcaagtccaattgttggatttcc |
209 |
Q |
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| T |
26080607 |
aaacgatgagtgattttttatatttgtaactggtgatctagatatggactagcacactgcagcgaactattcttaccgcaagtccaattgttggatttcc |
26080706 |
T |
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| Q |
210 |
caaggtcagtgtcactcatcgtttaactaacggttgcattgcatgcagtcatgtgttcatgtcaggaaaattgagttgtcacatttacacattattgtgt |
309 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26080707 |
caaggtcagtgtcactcaccgtttaactaacggttgcattgcatgcagtcatgtgttcatgtcaggaaaattgagttgtcacatttacacattattttgt |
26080806 |
T |
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| Q |
310 |
tcctgcacttatagtgtttaaatgtttgtcagattcaatggcgtgcacttgatga |
364 |
Q |
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| T |
26080807 |
tcctgcacttataatctttaaatgtttgttagattcaatggcgtgcacttgatga |
26080861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 30598196 - 30598273
Alignment:
| Q |
146 |
tctagatatggactagcacacagcagcgaactattcttaccgcaagtccaattgttggatttcccaaggtcagtgtca |
223 |
Q |
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||||||||||||| || |||| |||||||| ||||| || ||| | || |||||||||||||| ||||| ||||||| |
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| T |
30598196 |
tctagatatggaccagtacactacagcgaacaattctgacagcaggccccattgttggatttcctaaggttagtgtca |
30598273 |
T |
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