View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10644_7 (Length: 374)
Name: NF10644_7
Description: NF10644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10644_7 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 7 - 352
Target Start/End: Original strand, 38706210 - 38706547
Alignment:
| Q |
7 |
ccaagaatataaacaaaagagtcaaccagtcaaaccccaaactataagcttagttccatcttaatcctaaagtagtaatattaattaaatttactcaaac |
106 |
Q |
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| T |
38706210 |
ccaaaaatataaacaaaagagtcaaccagtcaaaccccaaactataagcttggttccatcttaatcctaaagtagtaatattaattaaatttactcaaac |
38706309 |
T |
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| Q |
107 |
tggtgcattattcgtgtaccaagtcgtcactattccgtacccttttaatttatattttgtagactagtgcaaaccttgcagtatacctattcttatccga |
206 |
Q |
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| T |
38706310 |
tggtgcattattcgtgtaccaagtcgtcactattccgtacccttttaatttatattttgtagactagtgcaaaccttgaagtatacctatccttatccga |
38706409 |
T |
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| Q |
207 |
ctctattatnnnnnnnnnnnncacaataactccacatgcccccaatgagatggacatcatcaattaacaatcaaaatcttacacgtttcttcgtttctca |
306 |
Q |
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||||||||| ||||||||||||||||||||||||| || || | ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38706410 |
ctctattat----tatatatacacaataactccacatgcccccaataag--tgaaaccatcaatta--aatcaaaatcttacacgtttcttcgtttctca |
38706501 |
T |
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| Q |
307 |
tatatatttcatactgtttgttcttcctttcacaaaactaaatcac |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38706502 |
tatatatttcatactgtttgttcttcctttcacaaaactaaatcac |
38706547 |
T |
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