View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10644_8 (Length: 347)
Name: NF10644_8
Description: NF10644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10644_8 |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 6e-59; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 50 - 173
Target Start/End: Original strand, 42651711 - 42651834
Alignment:
| Q |
50 |
gtagggaagatcaattgcggaaagtagttgttttattaaatgaattcaaattaaccatagtcaatataatttctgaatttagagacatggacaaacaaca |
149 |
Q |
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| T |
42651711 |
gtagggaagatcaattgcggaaaatagttgttttattaaatgaattcaaattaatcatagtcaatataatttctgaatttagagacatggacaaacaaca |
42651810 |
T |
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| Q |
150 |
atcaacattcaagtattttcatca |
173 |
Q |
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| T |
42651811 |
atcaacattcaagtattttcatca |
42651834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 224 - 347
Target Start/End: Original strand, 42652417 - 42652540
Alignment:
| Q |
224 |
gtaaatgtctaatatgagtcggacatgcctcgtatatcttcaaattataattcaaggagcacgcaatatttgctacacatcgattaacctattcgtatga |
323 |
Q |
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| T |
42652417 |
gtaaatgtctaatatgagtcggacatgcctcgtatatcttcaaattataattcaaggagcacgcaatatttgctacacatcgattaacctattcatatga |
42652516 |
T |
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| Q |
324 |
atgagaaagttcatgattccaatc |
347 |
Q |
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| T |
42652517 |
atgagaaagttcatcattccaatc |
42652540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 290
Target Start/End: Original strand, 31338230 - 31338296
Alignment:
| Q |
224 |
gtaaatgtctaatatgagtcggacatgcctcgtatatcttcaaattataattcaaggagcacgcaat |
290 |
Q |
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| T |
31338230 |
gtaaatgtctaatttgagtcgaacatggctcatatatcttcagattataatccaaagagcaagcaat |
31338296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 298
Target Start/End: Complemental strand, 50565095 - 50565025
Alignment:
| Q |
225 |
taaatgtctaatatgagtcggacatgcctcgtatatcttcaaattataattcaaggagcacgcaatatttgcta |
298 |
Q |
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| T |
50565095 |
taaatgtctaatttgagt---acatgtctcgtatatcttcaaattataatccaaagagcacacagtatttgcta |
50565025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 290
Target Start/End: Original strand, 21309891 - 21309957
Alignment:
| Q |
224 |
gtaaatgtctaatatgagtcggacatgcctcgtatatcttcaaattataattcaaggagcacgcaat |
290 |
Q |
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| T |
21309891 |
gtaaatgtctaatttgagtcggacatgtctcaaatatcttcagattataatccaaagagcaagcaat |
21309957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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