View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10645_2 (Length: 540)

Name: NF10645_2
Description: NF10645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10645_2
NF10645_2
[»] chr8 (2 HSPs)
chr8 (33-105)||(12933811-12933883)
chr8 (45-82)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (33-105)||(14177081-14177153)
chr4 (35-105)||(28608724-28608794)
chr4 (44-97)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (75-112)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (75-112)||(796698-796735)
chr6 (75-112)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (75-112)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 12933883 - 12933811
Alignment:
Q  33 tcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 105  Q
    |||||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  12933883 tcaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 12933811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
Q  45 ggttgctccatataaatctcctcttccaaatctccatg 82  Q
    ||||||||||||||||||||||||||||| || |||||    
T  36999974 ggttgctccatataaatctcctcttccaagtcaccatg 36999937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 14177153 - 14177081
Alignment:
Q  33 tcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 105  Q
    |||||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  14177153 tcaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 14177081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 28608724 - 28608794
Alignment:
Q  35 aaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 105  Q
    |||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  28608724 aaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 28608794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 20706234 - 20706182
Alignment:
Q  44 tggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagtttt 97  Q
    |||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||    
T  20706234 tggttgctccatataa-tctccttttctaaatctccatgtagaaatgcattttt 20706182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 6692123 - 6692086
Alignment:
Q  75 tctccatgaagaaatgcagttttcacatccaactgctc 112  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  6692123 tctccatgaagaaatgcagtcttcacatctaactgctc 6692086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 796698 - 796735
Alignment:
Q  75 tctccatgaagaaatgcagttttcacatccaactgctc 112  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  796698 tctccatgaagaaatgcagtcttcacatctaactgctc 796735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 8273129 - 8273092
Alignment:
Q  75 tctccatgaagaaatgcagttttcacatccaactgctc 112  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  8273129 tctccatgaagaaatgcagtcttcacatctaactgctc 8273092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 19944073 - 19944036
Alignment:
Q  75 tctccatgaagaaatgcagttttcacatccaactgctc 112  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  19944073 tctccatgaagaaatgcagtcttcacatctaactgctc 19944036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University