View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10645_4 (Length: 343)
Name: NF10645_4
Description: NF10645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10645_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 8 - 343
Target Start/End: Complemental strand, 41825159 - 41824824
Alignment:
| Q |
8 |
ccaagaatatcattaactcttttataccttttgttcaaatcattgaacttgtcttcacattgttgaggtgaaacatagtaccccttttccatcattcctt |
107 |
Q |
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| T |
41825159 |
ccaagaatatcattaactcttttataccttttgttcaaatcattgaacttgtcttcacattgttgaggtgaaacatagtaccctttttccatcattcctt |
41825060 |
T |
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| Q |
108 |
tggaaactgatttccatttccctttcttttgtaataaaccattagctttctttttatcggcacttaattctgaagtaccagcttcatcaccaatgtaata |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41825059 |
tggaaactgatttccatttccctttcttttgtaataaaccattagctttctttttatcagcacttaattctgaagtaccagcttcatcaccaatgtaata |
41824960 |
T |
|
| Q |
208 |
aacagccattattaagagtcttaccattgtatctgtccatttcattctatgccatggtgatccttttctttttgggtcaccaacagaggtttcatctgct |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41824959 |
aacagccattattaagagtcttaccattgtatctgtccatttcattctatgccatggtgatccttttctttttgggtcaccaacagaggtttcatctgct |
41824860 |
T |
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| Q |
308 |
ccaaaacatggttcatcttcatcactgaggttgatg |
343 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
41824859 |
ccaaaacatggttcatcttcatcactgaggttgatg |
41824824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 8 - 333
Target Start/End: Original strand, 26920125 - 26920450
Alignment:
| Q |
8 |
ccaagaatatcattaactcttttataccttttgttcaaatcattgaacttgtcttcacattgttgaggtgaaacatagtaccccttttccatcattcctt |
107 |
Q |
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||||| |||||||| ||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||| |||| ||||||||||| | |
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| T |
26920125 |
ccaagtatatcattcactctcttataccttttattcaaatcattaaacttatcttcacattgttgaggtgacacataaaaccctttttccatcatagccc |
26920224 |
T |
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| Q |
108 |
tggaaactgatttccatttccctttcttttgtaataaaccattagctttctttttatcggcacttaattc-tgaagtaccagcttcatcaccaatgtaat |
206 |
Q |
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| ||||| |||||||| || || ||||| ||||| |||||| ||| || || |||| | | | | | | | || ||||||||||||||||||||||| |
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| T |
26920225 |
ttgaaacagatttccactttcccttcttctgtaacaaaccactagactttttcttatttgga-tcagtcccttcagaaccagcttcatcaccaatgtaat |
26920323 |
T |
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| Q |
207 |
aaacagccattattaagagtcttaccattgtatctgtccatttcattctatgccatggtgatccttttctttttgggtcaccaacagaggtttcatctgc |
306 |
Q |
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||||||||||||| || || |||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||| ||||| |||| || || |
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| T |
26920324 |
aaacagccattatcaatagccttaccattgtatcagtccatttcattctttgccatggtgaaatcttcctttttgggtcaccaccagagctttcttcagc |
26920423 |
T |
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| Q |
307 |
tccaaaacatggttcatcttcatcact |
333 |
Q |
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| |||| |||||||||||||||||| |
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| T |
26920424 |
tggaaaatttggttcatcttcatcact |
26920450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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