View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10645_6 (Length: 303)
Name: NF10645_6
Description: NF10645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10645_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 42530114 - 42530418
Alignment:
| Q |
1 |
gggatgactctgaagatcaatcgaagaaaaccaatgcggtaggttccatcaatgtgcgcagcatcttgtcggggaaatgtgtggcgaaaattaatgctgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42530114 |
gggatgactctgaagatcaatcgaaggaaaccaatgcggtaggttccatcaatgtgagcagcatcttgtcggggaaatgtgtggcgaaaattaatgctgc |
42530213 |
T |
|
| Q |
101 |
aaaagctttggagtgcattgattcatctcaaataatgtcagct------ccagaggctttggagggtatagcaatcctcta--------ttatgatgaag |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | | |||||| ||||||||||| |
|
|
| T |
42530214 |
aaaagctttggagtgcattgattcatctcaaataatgtcagttccagtcccagaggctttggagggtataaccaccctctattatgaatttatgatgaag |
42530313 |
T |
|
| Q |
187 |
accggaacacgatttatacgggtgacagacatggtcttgttcatgtctggtccaactccaaccaactgatgataaaaaaggagtaggttttattgtttca |
286 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42530314 |
accggaacgcgatttatacgggtaacagacatggtcttgttcatgtctggtccaactccaaccaactgatgataaaaaaggaataggttttattgtttct |
42530413 |
T |
|
| Q |
287 |
tctca |
291 |
Q |
| |
|
||||| |
|
|
| T |
42530414 |
tctca |
42530418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 42535830 - 42536120
Alignment:
| Q |
1 |
gggatgactctgaagatcaatcgaagaaaaccaatgcggtaggttccatcaatgtgcgcagcatcttgtcggggaaatgtgtggcgaaaattaatgctgc |
100 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||| | ||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
42535830 |
gggatgactctgaagatcaatcgatggttaccaatgtgataggttccatcaatgtgagcaacatcttatcggggaaatgtgtggcgaaaattaatgctac |
42535929 |
T |
|
| Q |
101 |
aaaagctttggagtgcattgattcatctcaaataatgtcagctccagaggctttggagggtatagcaatcctctattatgatgaagaccggaacacgatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||| | |||||||||||||||||||| | | ||||||||||||||||||||||||| ||||| |
|
|
| T |
42535930 |
aaaagctttggagtgcattgattcatctaaaaaaatgtcagttacagaggctttggagggtataaccaccctctattatgatgaagaccggaacgcgatt |
42536029 |
T |
|
| Q |
201 |
tatacgggtgacagacatggtcttgttcatgtctggtccaactccaaccaactgatgataaaaaaggagtaggttttattgtttcatctca |
291 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
42536030 |
tatacgggtaacagacatggtcatgttcatgtctggtccaactccaaccaactaatgataaaaaaggaataggttttattgtttcttctca |
42536120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 27826012 - 27826073
Alignment:
| Q |
42 |
ggttccatcaatgtgcgcagcatcttgtcggggaaatgtgtggcgaaaattaatgctgcaaa |
103 |
Q |
| |
|
||||||||||||||| ||| ||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
27826012 |
ggttccatcaatgtgagcaacatcttgacagggaaatgtgtggcgaaaattaatgctgcaaa |
27826073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 243
Target Start/End: Original strand, 27826179 - 27826252
Alignment:
| Q |
170 |
cctctattatgatgaagaccggaacacgatttatacgggtgacagacatggtcttgttcatgtctggtccaact |
243 |
Q |
| |
|
||||| ||||||||||||||||||| ||| ||||| ||| | ||||||||| |||||||||| |||||||||| |
|
|
| T |
27826179 |
cctcttttatgatgaagaccggaacgagatctatactggtaatagacatggttttgttcatgtatggtccaact |
27826252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University