View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10645_low_1 (Length: 485)
Name: NF10645_low_1
Description: NF10645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10645_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 473
Target Start/End: Original strand, 13078342 - 13078797
Alignment:
| Q |
18 |
ctttattctcttctattccttctttaatgtaaccatattgttctccgtctcttagttcaggtgctcgaacatgatctttggtttttggaaattcacattg |
117 |
Q |
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| T |
13078342 |
ctttattctcttctattccttctttaatgtaaccatattgttctccgtctcttagttcaggtgctcgaacatgatctttggtttttggaaattcacattg |
13078441 |
T |
|
| Q |
118 |
caaatcaggcatttctagttcaagaggccttttagctttcacttcatcaatatcattcttttggcttgattccaaggattccgcgtctttctcttgtgtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13078442 |
caaatcaggcatttctagttcaagaggccttttagctttcacttcatcaatatcattcttttggcttgattccaaggattccgcgtctttctcttgtgtt |
13078541 |
T |
|
| Q |
218 |
gttttcattttttcatcaaagcattttcctttatccatcttttcagtaacaacttttgccacatgttgtttctctttagtatcaattctattcttaggct |
317 |
Q |
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| T |
13078542 |
gttttcattttttcatcaaagcattttcctttatccatcttttcagtaacaacttttgccacatgttgtttctctttagtatcaattctattcttaggct |
13078641 |
T |
|
| Q |
318 |
catcagtttccatttgcattgtttcccccacattttcaccatttagaaattcagttttttctcctttcttgtgctcttcttctcgaggaatttctggctt |
417 |
Q |
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| T |
13078642 |
catcagtttccatttgcattgtttcccccacattttcaccatttagaaattcagttttttctcctttcttgtgctcttcttctcgaggaatttctggctt |
13078741 |
T |
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| Q |
418 |
caaagtttccttcatttcaatcaaattttggacatcttttgtaggatcttccctct |
473 |
Q |
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| T |
13078742 |
caaagtttccttcatttcaatcaaattttggacatcttttgtaggatcttccctct |
13078797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 18 - 473
Target Start/End: Original strand, 13074138 - 13074593
Alignment:
| Q |
18 |
ctttattctcttctattccttctttaatgtaaccatattgttctccgtctcttagttcaggtgctcgaacatgatctttggtttttggaaattcacattg |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
13074138 |
ctttattctcttctattccttctttaatgtaaccatattgttctccgtctcttagttcaagtgctcgaacatgatctttggtttttggaaattcacattg |
13074237 |
T |
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| Q |
118 |
caaatcaggcatttctagttcaagaggccttttagctttcacttcatcaatatcattcttttggcttgattccaaggattccgcgtctttctcttgtgtt |
217 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13074238 |
caaataaggaatttctagttcaagaggccttttagctttcacttcatcaatatcattcttttggcttgattccaaggattccgcatctttctcttgtgtt |
13074337 |
T |
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| Q |
218 |
gttttcattttttcatcaaagcattttcctttatccatcttttcagtaacaacttttgccacatgttgtttctctttagtatcaattctattcttaggct |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13074338 |
attttcattttttcatcaaagcattttcctttatccatcttttcagtaacaactttagccacatgttgtttctctttagtatcaattctattcttaggct |
13074437 |
T |
|
| Q |
318 |
catcagtttccatttgcattgtttcccccacattttcaccatttagaaattcagttttttctcctttcttgtgctcttcttctcgaggaatttctggctt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
13074438 |
catcagtttccatttgcattgtttcccccacattttcaccatttagaaattcagttttttctcctttcatgagctcttcttctcgaggaatttctggctt |
13074537 |
T |
|
| Q |
418 |
caaagtttccttcatttcaatcaaattttggacatcttttgtaggatcttccctct |
473 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13074538 |
caaagtttccttcatttcaatcaaattttgaacatcttttgtaggatcttccctct |
13074593 |
T |
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