View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10645_low_2 (Length: 351)
Name: NF10645_low_2
Description: NF10645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10645_low_2 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 25 - 340
Target Start/End: Original strand, 27207758 - 27208073
Alignment:
| Q |
25 |
gttatttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggcacaatcggcagtggcacagctgaactttccattgt |
124 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||| ||||||||| |||| |||| |
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|
| T |
27207758 |
gttatttctaccagtgttgctggtgggattgcgccagcaccgttgcaaccgacttgaccggaggcacaatcggcggtggcgcagctgaaccttccgttgt |
27207857 |
T |
|
| Q |
125 |
tgtctgagcatccagttcggccccaaaatcttcccgaccatggtgatggaaggtccaccgcaattgttgctccaggtcctaactcaaaacccgtcgttga |
224 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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|
| T |
27207858 |
tgtcggagcatccagttcggccccaaaatcttcccgaccatggtgatggaaggtccaccgcaattgttgctccaggtcctaactcaaaacccgttgtcga |
27207957 |
T |
|
| Q |
225 |
tagctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcatacaaa |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27207958 |
tagctgaggtttttggtctccagttaacgttcctggccatacagtgtatgcacacctatttgtgaatgtcaccttagctcctccaaccactgcatacaaa |
27208057 |
T |
|
| Q |
325 |
tgcaaaatacgttcat |
340 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
27208058 |
tgaaaaatacgttcat |
27208073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 340
Target Start/End: Original strand, 27432833 - 27433153
Alignment:
| Q |
20 |
ctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggcacaatcggcagtggcacagctgaactttcc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
27432833 |
ctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttacaaccgacttgaccagaggcacaatcggcggtggcacaactgaactttcc |
27432932 |
T |
|
| Q |
120 |
attgttgtctgagcatccagttcggccccaaaatcttcccgaccatggtgatggaaggtccaccgcaattgttgctccaggtcctaactcaaaacccgtc |
219 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
27432933 |
attgttgttggagcatccggttcgtccccaaaatcgacccgaccatggtgatggaaggtccacctcaattgttgctccaggtcctaactcaaaacccgtt |
27433032 |
T |
|
| Q |
220 |
gttgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcat |
319 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
27433033 |
gttgatagctgaggcttttggtctccagttaacgttcccggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccgctgcat |
27433132 |
T |
|
| Q |
320 |
acaaatgcaaaatacgttcat |
340 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
27433133 |
acaaatgcaaaatacgttcat |
27433153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 320
Target Start/End: Original strand, 27215124 - 27215424
Alignment:
| Q |
20 |
ctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggcacaatcggcagtggcacagctgaactttcc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27215124 |
ctacggttatttctaccaatgttgctggtgggattgcgccagcaccattgcaaccgagttgaccagaggcacaatcggcggtggcacagctgaactttcc |
27215223 |
T |
|
| Q |
120 |
attgttgtctgagcatccagttcggccccaaaatcttcccgaccatggtgatggaaggtccaccgcaattgttgctccaggtcctaactcaaaacccgtc |
219 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||| || ||||||||||||||||||||||| | ||| || |||||| ||| ||||| ||||| ||| |
|
|
| T |
27215224 |
attgttgttgaagcatccggttcggccccaaaatcgaccagaccatggtgatggaaggtccactgaaatagtaactccagatcccaactcgaaacctgtc |
27215323 |
T |
|
| Q |
220 |
gttgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcat |
319 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27215324 |
gttgatagctgaggtttttggtctccggttaacgttcctggccatacagtgtattcacacctatttgtgaacgtcaccttagctcctccaaccactgcat |
27215423 |
T |
|
| Q |
320 |
a |
320 |
Q |
| |
|
| |
|
|
| T |
27215424 |
a |
27215424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 320
Target Start/End: Original strand, 27221086 - 27221386
Alignment:
| Q |
20 |
ctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggcacaatcggcagtggcacagctgaactttcc |
119 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27221086 |
ctaccgttatttctaccaatgttgctggtgggattgccccagcaccgttgcaaccgacttgaccagaggcacaatcggcggtggcacagctgaactttcc |
27221185 |
T |
|
| Q |
120 |
attgttgtctgagcatccagttcggccccaaaatcttcccgaccatggtgatggaaggtccaccgcaattgttgctccaggtcctaactcaaaacccgtc |
219 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||| | ||| || |||||| ||| ||||| ||||| ||| |
|
|
| T |
27221186 |
attgttgttgaagcatccggttcggccccaaaatctacccgaccatggtgatggaaggtccactgaaatagtaactccagatcccaactcgaaacctgtc |
27221285 |
T |
|
| Q |
220 |
gttgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcat |
319 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27221286 |
gttgatagctgaggtttttggtctccggttaacgttcctggccatacagtgtattcacacctatttgtgaaagtcaccttagctcctccaaccactgcat |
27221385 |
T |
|
| Q |
320 |
a |
320 |
Q |
| |
|
| |
|
|
| T |
27221386 |
a |
27221386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 320
Target Start/End: Complemental strand, 27443777 - 27443477
Alignment:
| Q |
20 |
ctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggcacaatcggcagtggcacagctgaactttcc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27443777 |
ctacggttatttctaccaatgttgctggtgggattgcgccagcaccattgcaaccgagttgaccagaggcacaatcggcggtggcacagctgaactttcc |
27443678 |
T |
|
| Q |
120 |
attgttgtctgagcatccagttcggccccaaaatcttcccgaccatggtgatggaaggtccaccgcaattgttgctccaggtcctaactcaaaacccgtc |
219 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||| || ||||||||||||||||||||||| | ||| || |||||| ||| ||||| ||||| ||| |
|
|
| T |
27443677 |
attgttgttgaagcatccggttcggccccaaaatcgaccagaccatggtgatggaaggtccactgaaatagtaactccagatcccaactcgaaacctgtc |
27443578 |
T |
|
| Q |
220 |
gttgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcat |
319 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
27443577 |
gttgatagctgaggtttttggtctccggttaacgttcctggccatacagtgtattcacacctatttgtgaacgtcaccttagctcctccaacaactgcat |
27443478 |
T |
|
| Q |
320 |
a |
320 |
Q |
| |
|
| |
|
|
| T |
27443477 |
a |
27443477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 28 - 324
Target Start/End: Original strand, 27389055 - 27389351
Alignment:
| Q |
28 |
atttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggcacaatcggcagtggcacagctgaactttccattgttgt |
127 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| ||||| | | ||||||||| |||||||||||||||||||| | |||| ||| |||||| |
|
|
| T |
27389055 |
atttcaaccaaagttgctggtgggattgcgccagcaccattgcatgcaacttgaccagatgcacaatcggcagtggcacaagtaaactgtccgttgttgg |
27389154 |
T |
|
| Q |
128 |
ctgagcatccagttcggccccaaaatcttcccgaccatggtgatggaaggtccaccgcaattgttgctccaggtcctaactcaaaacccgtcgttgatag |
227 |
Q |
| |
|
||||||||| |||||| ||||||||| || |||||||| || |||| ||| | | | |||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
27389155 |
ttgagcatccggttcgggcccaaaatcgacctgaccatggggaaggaatttccgctgagttcgttgctccaggtcctaactcgaaacctgttgttgatag |
27389254 |
T |
|
| Q |
228 |
ctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcatacaaa |
324 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||| |||||| |||| ||||| |||||||| ||| | ||||||| | | ||||||||||| |
|
|
| T |
27389255 |
ctgaggtttttggtctccggttaaggttcctggccatacggtgtatccacatctattcgtgaatgttaccgtggctcctctagcagctgcatacaaa |
27389351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 40 - 324
Target Start/End: Original strand, 27410023 - 27410307
Alignment:
| Q |
40 |
gttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggcacaatcggcagtggcacagctgaactttccattgttgtctgagcatccag |
139 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || | ||||||||| |||||||||| |||||||| || |||||| | |||||| ||||||||| | |
|
|
| T |
27410023 |
gttgctggtgggattgcgccagcaccattgcaccccacttgaccagacccacaatcggctgtggcacaactaaacttttctttgttgattgagcatccgg |
27410122 |
T |
|
| Q |
140 |
ttcggccccaaaatcttcccgaccatggtgatggaaggtccaccgcaattgttgctccaggtcctaactcaaaacccgtcgttgatagctgaggtttttg |
239 |
Q |
| |
|
||| ||||||||| || ||||||| || ||||||| ||||| || |||| |||| ||||||||||| || ||||||| ||||| |||| |
|
|
| T |
27410123 |
ttcttgcccaaaatcgaccagaccatgaagaaggaaggttcaccgagtacgtcactccttgtcccaactcaaaacctgttgttgataattgaggggtttg |
27410222 |
T |
|
| Q |
240 |
gtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcatacaaa |
324 |
Q |
| |
|
|| ||| || ||||||||||||||||| ||| |||| ||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27410223 |
agctgtagtaaaggttcctggccatacagtatatccacatctattcgtgaatgtcaccttggctcctccaaccactgcatacaaa |
27410307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 130 - 333
Target Start/End: Original strand, 27455093 - 27455294
Alignment:
| Q |
130 |
gagcatccagttcggccccaaaatcttcccgaccatggtgatggaaggtccaccgcaattgttgctccaggtcctaactcaaaacccgtcgttgatagct |
229 |
Q |
| |
|
|||||||| ||||||| ||||||| || || |||||||||||||||||||| | ||| || ||| || ||| || || |||| |||||| |||||| |
|
|
| T |
27455093 |
gagcatccgattcggcctcaaaatcaacctgatcatggtgatggaaggtccactgaaatagta-ctctagatcccaagtcgaaacttgtcgttcatagct |
27455191 |
T |
|
| Q |
230 |
gaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcatacaaatgcaa |
329 |
Q |
| |
|
|||||||||| |||| |||||||||| || | |||||| | ||||||||| |||| |||||||||||||||||||||||||| |||| || |||||||| |
|
|
| T |
27455192 |
gaggtttttg-tctctagttaacgtttctagtcatacaatttattcacacttattggtgaatgtcaccttagctcctccaactactgattagaaatgcaa |
27455290 |
T |
|
| Q |
330 |
aata |
333 |
Q |
| |
|
|||| |
|
|
| T |
27455291 |
aata |
27455294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 253 - 324
Target Start/End: Complemental strand, 27415821 - 27415750
Alignment:
| Q |
253 |
gttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcatacaaa |
324 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| |||||||||||||| |||||||||||| ||||| ||||| |
|
|
| T |
27415821 |
gttcctggccatacagtgtatacacatctattcgtgaatgtcaccttggctcctccaacctctgcagacaaa |
27415750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 27454755 - 27454834
Alignment:
| Q |
25 |
gttatttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggcacaatcggcagtggc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||| | ||| |||| | |||||| ||| ||||||||||||||| |
|
|
| T |
27454755 |
gttatttctaccaatgttgctggtgggattgcacctgcatcattggaacccatttgaccggagatacaatcggcagtggc |
27454834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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