View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10645_low_3 (Length: 325)
Name: NF10645_low_3
Description: NF10645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10645_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 11975216 - 11974909
Alignment:
| Q |
1 |
tgatggattgtggtggagttcctttcttgataatattcaaagcaatatttgtaaacaatcattgtgctgatcttgccgttgctgatctgaataaggagga |
100 |
Q |
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| T |
11975216 |
tgatggattgtggtggagttcctttcttgataatattcaaagcaatatttgtaaacaatcattgtgctgatcttgccgttgctgatctgaataaggagga |
11975117 |
T |
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| Q |
101 |
atttctaaaagagcttaaggttagatactacgacaaacttccaagccctcagaagttttgttttgaattttgttcattgtttcctcgagatcatttgatt |
200 |
Q |
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| T |
11975116 |
atttctaaaagagcttaaggttagatactacgacaaacttccaagccctcagaagttttgttttgaattttgttcattgtttcctcaagatcatttgatt |
11975017 |
T |
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| Q |
201 |
gatgtcgagagattaattcatctcttgacagcagaaggatttcaatcggatttagaaaactctacagaagacaaattccgccagtatttcaacgactttg |
300 |
Q |
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| T |
11975016 |
gatgtcgagagattaattcatctcttgacagcagaaggatttcaatcggatttagaaaactctacagaagacaaattccgccagtatttcaacgactttg |
11974917 |
T |
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| Q |
301 |
ttgggatg |
308 |
Q |
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| T |
11974916 |
ttgggatg |
11974909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 243
Target Start/End: Complemental strand, 11902770 - 11902680
Alignment:
| Q |
153 |
aagttttgttttgaattttgttcattgtttcctcgagatcatttgattgatgtcgagagattaattcatctcttgacagcagaaggatttc |
243 |
Q |
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| T |
11902770 |
aagttatgttttgcatattgttcattgtttccaagagattatttgattgatgctgagagattaattgaactctggactgctgaaggatttc |
11902680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 11731432 - 11731490
Alignment:
| Q |
162 |
tttgaattttgttcattgtttcctcgagatcatttgattgatgtcgagagattaattca |
220 |
Q |
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| T |
11731432 |
tttgcattttgttcattgtttccagaacatcatttgattgatgccgagagattaattca |
11731490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 12038509 - 12038603
Alignment:
| Q |
149 |
tcagaagttttgttttgaattttgttcattgtttcctcgagatcatttgattgatgtcgagagattaattcatctcttgacagcagaaggatttc |
243 |
Q |
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| T |
12038509 |
tcagaagttgtgctttgcatattgttcattgtttccagaagattatttaattgatgccgagagattaattcaactttggacggctgaaggatttc |
12038603 |
T |
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