View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10646_high_1 (Length: 488)
Name: NF10646_high_1
Description: NF10646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10646_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 74 - 481
Target Start/End: Complemental strand, 45147117 - 45146727
Alignment:
| Q |
74 |
tggtgaatgtgggacaatgttgttgtggctaataaatgaacaacattaatttatttatttgtttgcgaataaaatttatcttgaagttttaagtcgaact |
173 |
Q |
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| T |
45147117 |
tggtgaatgtaggacaatgttgttgtggctaataaatgaacgaca----------------tttgcgaataaaatttatcttaaagttttaagtcgaact |
45147034 |
T |
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| Q |
174 |
gcttgaagccttacaaaaatttaaaatactagcaaagttgaaattgatattgaatttactatggataccgtcgaccagttgcttaccaccaagttcgata |
273 |
Q |
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| T |
45147033 |
acgtgaagccttacaaaaatttaaaatactagcaaaattgaaattgatattgaatttactatggatatagtcaaccacttacttacgatcaagttcgata |
45146934 |
T |
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| Q |
274 |
gacaactctgaaaactcatatttcaactaccaagtcaattgattgcctcctttaagcctcatttcagcttctttagattgtggtaaccttttttaccaag |
373 |
Q |
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| T |
45146933 |
gacacctcttaaaactc--atttcagctaccaagtcaactgattgcctcctttaagcctcattccagcttctttagattgtggtaaccttttataccaag |
45146836 |
T |
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| Q |
374 |
aactcacctttattatccttcatacacatcctataccatagcgcccttgcttctgaaagattgtcggatcaacgatacacttcagtg-ccccacttcaga |
472 |
Q |
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| T |
45146835 |
aactcacctttattgtccttcatacacatcctataccatagcgtccttgcttttgaaagattgtcggatcaacgatacacttcagcgcccccacttcaga |
45146736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 45147220 - 45147171
Alignment:
| Q |
18 |
aagtcattcatgtgaattttacttcatctcattaagaaaatgaatgttag |
67 |
Q |
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| T |
45147220 |
aagtcattcatgtgaattttacttcgtctcattaagaaaatgaatgttag |
45147171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 438
Target Start/End: Complemental strand, 14264536 - 14264492
Alignment:
| Q |
395 |
atacacatcct-ataccatagcgcccttgcttctgaaagattgtc |
438 |
Q |
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| T |
14264536 |
atacacatccttataccataccgcccttgctcctgaaagattgtc |
14264492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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